C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meis homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491706 MEIS1-008 ENSG00000143995 9606 + 2:66435169-66443772 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENST00000491706
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENST00000491706 1.529±0.00 0.790±0.00 11.898±0.00 0.666±0.00 3.572±0.00 5.442±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ET CIL_0008ET_0001 VISTA 2:65870410-66471811
CIL_00085V CIL_00085V_0001 VISTA 2:65983424-66584663
CIL_0007JR CIL_0007JR_0003 UCNEbase 2:66138106-68180953
CIL_0008VO CIL_0008VO_0001 VISTA 2:66222407-66823799
CIL_000949 CIL_000949_0001 VISTA 2:66235383-66837956
CIL_00094L CIL_00094L_0001 VISTA 2:66397571-66998983

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137300 Meis1-003 retained_intron Mus_musculus 0 2771
ENSMUST00000125722 Meis1-002 retained_intron Mus_musculus 0 1775
ENSMUST00000185131 Meis1-201 protein_coding Mus_musculus 0 1345
ENSMUST00000068264 Meis1-001 protein_coding Mus_musculus 0 1345
ENSMUST00000144988 Meis1-005 protein_coding Mus_musculus 0 1345
ENSMUST00000177417 Meis1-008 protein_coding Mus_musculus 0 1037
ENSMUST00000102878 Meis1-004 nonsense_mediated_decay Mus_musculus 0 1037
ENSMUST00000177357 Meis1-007 nonsense_mediated_decay Mus_musculus 0 435
ENSMUST00000118661 Meis1-006 processed_transcript Mus_musculus 0 261
ENSDART00000102576 meis1-001 protein_coding Danio_rerio 0 246
ENSDART00000140215 meis1-002 retained_intron Danio_rerio 0 219

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