C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2 pseudogene 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494599 RPS2P24-001 ENSG00000244019 9606 + 5:77545397-77546266 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000494599
Transcript ID Adipose Adrenal Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000494599 0.121±0.00 0.077±0.00 0.352±0.00 0.024±0.00 0.054±0.00 0.046±0.00 0.281±0.00 0.311±0.00 0.034±0.00 0.058±0.00 0.191±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000979 CIL_000979_0001 VISTA 5:77339400-77940441
CIL_00091A CIL_00091A_0001 VISTA 5:77345011-77945571
CIL_0008DK CIL_0008DK_0001 VISTA 5:77424780-78026683
CIL_00091B CIL_00091B_0001 VISTA 5:77543897-78144918

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 521
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 496
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 496
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000190239 RP23-16N14.5-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000119539 Gm14234-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 309

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