C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 17971
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190239 RP23-16N14.5-001 ENSMUSG00000101122 10090 + 1:55066264-55067069 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000190239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000190239 1.132±0.34 3.282±1.04 2.726±0.35 0.684±0.22 1.224±0.17 1.974±0.20 1.136±0.14 1.164±0.19 0.767±0.20 2.500±0.35 0.533±0.30 1.566±0.93 0.689±0.28 0.897±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_00042R CIL_00042R_0003 CGP 1:54985169-55072702
CIL_0002KH CIL_0002KH_0002 CGP 1:55052770-55088243

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 0 534
ENST00000445918 RP11-388B24.4-001 processed_pseudogene Homo_sapiens 0 422
ENST00000447420 RP4-803A2.2-001 unprocessed_pseudogene Homo_sapiens 0 411
ENST00000447422 RP11-109P14.8-001 processed_pseudogene Homo_sapiens 0 340
ENST00000448547 AC007279.2-001 processed_pseudogene Homo_sapiens 0 444
ENST00000457299 AC087163.2-001 processed_pseudogene Homo_sapiens 0 438
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 0 580
ENST00000488906 RP5-867C24.1-001 processed_pseudogene Homo_sapiens 0 462
ENST00000494599 RPS2P24-001 processed_pseudogene Homo_sapiens 0 429

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