C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2, pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121414 Rps2-ps9-001 ENSMUSG00000080731 10090 + 17:27784427-27785243 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121414
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121414 0.352±0.00 0.746±0.10 0.384±0.03 0.333±0.24 0.624±0.12 0.385±0.20 0.161±0.04 0.325±0.07 0.228±0.12 0.605±0.00 0.068±0.00 0.715±0.51 0.330±0.23 0.191±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LT CIL_0004LT_0003 CGP 17:27714352-27820558
CIL_000258 CIL_000258_0002 CGP 17:27751232-27851968

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 542
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 542
ENST00000400363 RP5-890O15.3-001 processed_pseudogene Homo_sapiens 0 510
ENST00000433054 RP11-1O7.1-001 processed_pseudogene Homo_sapiens 0 630
ENST00000436136 RP11-16L9.1-001 processed_pseudogene Homo_sapiens 0 545
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 0 649
ENST00000445918 RP11-388B24.4-001 processed_pseudogene Homo_sapiens 0 523
ENST00000447420 RP4-803A2.2-001 unprocessed_pseudogene Homo_sapiens 0 560
ENST00000447422 RP11-109P14.8-001 processed_pseudogene Homo_sapiens 0 407
ENST00000448547 AC007279.2-001 processed_pseudogene Homo_sapiens 0 510
ENST00000457299 AC087163.2-001 processed_pseudogene Homo_sapiens 0 518
ENST00000468126 RP11-324J13.1-001 processed_pseudogene Homo_sapiens 0 621
ENST00000478038 RPS2P44-001 processed_pseudogene Homo_sapiens 0 527
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 0 710
ENST00000488906 RP5-867C24.1-001 processed_pseudogene Homo_sapiens 0 619
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 0 521
ENST00000494599 RPS2P24-001 processed_pseudogene Homo_sapiens 0 592

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