C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, T type, alpha 1G subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503607 CACNA1G-033 ENSG00000006283 9606 + 17:50561460-50626766 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyMuscleENST00000503607
Transcript ID Adipose Breast Colon Kidney Muscle
ENST00000503607 0.007±0.00 0.039±0.02 0.097±0.00 0.002±0.00 0.001±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X2 CIL_0004X2_0002 CGP 17:50543058-50627474

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005886 IBA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007411 TAS axon guidance
GO:0008332 IDA low voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042391 IDA regulation of membrane potential
GO:0045956 IBA positive regulation of calcium ion-dependent exocytosis
GO:0055085 IEA transmembrane transport
GO:0070509 IDA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107792 Cacna1g-004 protein_coding Mus_musculus 0 6678
ENSMUST00000107785 Cacna1g-006 protein_coding Mus_musculus 0 6582
ENSMUST00000107791 Cacna1g-002 protein_coding Mus_musculus 0 6582
ENSMUST00000107790 Cacna1g-010 protein_coding Mus_musculus 0 5995
ENSMUST00000021234 Cacna1g-201 protein_coding Mus_musculus 0 5993
ENSMUST00000107786 Cacna1g-001 protein_coding Mus_musculus 0 4305
ENSMUST00000152811 Cacna1g-007 processed_transcript Mus_musculus 0 3842
ENSMUST00000107789 Cacna1g-011 protein_coding Mus_musculus 0 3842
ENSMUST00000107788 Cacna1g-009 protein_coding Mus_musculus 0 3842
ENSMUST00000107793 Cacna1g-008 protein_coding Mus_musculus 0 3842
ENSMUST00000100561 Cacna1g-005 protein_coding Mus_musculus 0 3842
ENSMUST00000103166 Cacna1g-003 protein_coding Mus_musculus 0 3842
ENSMUST00000078496 Cacna1h-201 protein_coding Mus_musculus 0 935
ENSMUST00000159048 Cacna1h-002 protein_coding Mus_musculus 0 935
ENSMUST00000159610 Cacna1h-001 protein_coding Mus_musculus 0 935
ENSMUST00000162155 Cacna1i-002 nonsense_mediated_decay Mus_musculus 0 883
ENSMUST00000160424 Cacna1i-001 protein_coding Mus_musculus 0 883
ENSMUST00000146160 Cacna1g-014 processed_transcript Mus_musculus 0 883
ENSDART00000151012 si:ch73-379f7.5-001 protein_coding Danio_rerio 0 647
ENSDART00000141604 cacna1hb-001 protein_coding Danio_rerio 0 595
ENSDART00000103611 cacna1hb-201 protein_coding Danio_rerio 0 586
ENSDART00000145615 cacna1i-001 protein_coding Danio_rerio 0 584
ENSDART00000085216 cacna1i-201 protein_coding Danio_rerio 0 534
ENSDART00000085210 cacna1ha-201 protein_coding Danio_rerio 0 494
ENSDART00000154869 cacna1ha-001 protein_coding Danio_rerio 0 494
ENSMUST00000161454 Cacna1h-004 retained_intron Mus_musculus 0 438
ENSMUST00000133331 Cacna1g-015 processed_transcript Mus_musculus 0 424
ENSMUST00000161035 Cacna1h-008 protein_coding Mus_musculus 0 344
ENSMUST00000133000 Cacna1g-012 processed_transcript Mus_musculus 0 329
ENSMUST00000142190 Cacna1g-013 processed_transcript Mus_musculus 4.06377e-44 185
ENSMUST00000159623 Cacna1h-006 protein_coding Mus_musculus 9e-31 141
ENSMUST00000161658 Cacna1h-009 nonsense_mediated_decay Mus_musculus 1e-33 147

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