C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: kalirin, RhoGEF kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076810 Kalrn-011 ENSMUSG00000061751 10090 - 16:33975495-34456917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryENSMUST00000076810
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary
ENSMUST00000076810 0.547±0.28 0.224±0.07 0.248±0.12 0.669±0.00 0.350±0.07 0.508±0.13 1.077±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0002 VISTA 16:33792411-34395018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006468 IEA protein phosphorylation
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000000382 triob-201 protein_coding Danio_rerio 0 206
ENSDART00000153785 triob-001 protein_coding Danio_rerio 0 206
ENST00000240874 KALRN-005 protein_coding Homo_sapiens 0 6451
ENST00000291478 KALRN-001 protein_coding Homo_sapiens 0 5005
ENST00000344204 TRIO-001 protein_coding Homo_sapiens 0 1437
ENST00000354186 KALRN-004 protein_coding Homo_sapiens 0 11850
ENST00000360013 KALRN-201 protein_coding Homo_sapiens 0 11740
ENST00000393496 KALRN-002 protein_coding Homo_sapiens 0 2017
ENST00000393501 KALRN-008 retained_intron Homo_sapiens 0 2712
ENST00000439170 KALRN-009 protein_coding Homo_sapiens 0 859
ENST00000448253 KALRN-010 protein_coding Homo_sapiens 0 953
ENST00000454902 KALRN-003 protein_coding Homo_sapiens 0 490
ENST00000459915 KALRN-014 protein_coding Homo_sapiens 0 2146
ENST00000460856 KALRN-013 protein_coding Homo_sapiens 0 6565
ENST00000462213 KALRN-016 protein_coding Homo_sapiens 0 296
ENST00000471431 KALRN-017 retained_intron Homo_sapiens 0 505
ENST00000473056 KALRN-018 retained_intron Homo_sapiens 0 501
ENST00000484224 KALRN-020 retained_intron Homo_sapiens 0 538
ENST00000484542 KALRN-015 retained_intron Homo_sapiens 0 250
ENST00000494648 KALRN-019 retained_intron Homo_sapiens 0 595
ENST00000498499 KALRN-021 retained_intron Homo_sapiens 0 1031
ENST00000509967 TRIO-008 protein_coding Homo_sapiens 0 1199
ENST00000512070 TRIO-010 nonsense_mediated_decay Homo_sapiens 0 1437
ENST00000513206 TRIO-002 protein_coding Homo_sapiens 0 1437
ENST00000515144 TRIO-003 retained_intron Homo_sapiens 0 1437
ENST00000522553 KALRN-011 retained_intron Homo_sapiens 0 809

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