C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000523386 RP11-16E18.1-001 ENSG00000253555 9606 - 8:63136223-63138084 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungTestisENST00000523386
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Testis
ENST00000523386 0.024±0.00 0.016±0.00 0.008±0.00 0.007±0.00 0.023±0.00 0.014±0.00 0.074±0.00 0.028±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190696 Tardbp-011 nonsense_mediated_decay Mus_musculus 0 717
ENSMUST00000084125 Tardbp-001 protein_coding Mus_musculus 0 717
ENSMUST00000117876 Gm13886-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000147391 Tardbp-005 nonsense_mediated_decay Mus_musculus 0 298
ENSMUST00000186947 Tardbp-015 protein_coding Mus_musculus 1.00053e-42 178
ENSMUST00000172073 Tardbp-203 protein_coding Mus_musculus 7e-26 122
ENSMUST00000095719 Tardbp-007 protein_coding Mus_musculus 7e-26 122
ENSMUST00000105702 Tardbp-201 protein_coding Mus_musculus 2e-16 92
ENSMUST00000105700 Tardbp-003 protein_coding Mus_musculus 2e-16 92
ENSMUST00000190630 Tardbp-021 protein_coding Mus_musculus 2e-16 92
ENSMUST00000187939 Tardbp-019 protein_coding Mus_musculus 2e-16 92
ENSMUST00000140897 Tardbp-004 nonsense_mediated_decay Mus_musculus 2e-16 92
ENSMUST00000165113 Tardbp-202 protein_coding Mus_musculus 7e-16 90
ENSMUST00000189048 Tardbp-012 protein_coding Mus_musculus 7e-16 90
ENSMUST00000191378 Tardbp-018 nonsense_mediated_decay Mus_musculus 7e-16 90
ENSMUST00000045180 Tardbp-002 nonsense_mediated_decay Mus_musculus 7e-16 90
ENSMUST00000188488 Tardbp-022 protein_coding Mus_musculus 7e-16 90
ENSMUST00000188134 Tardbp-024 nonsense_mediated_decay Mus_musculus 7e-16 90
ENSMUST00000186711 Tardbp-025 protein_coding Mus_musculus 0.00000001 66

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