C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147391 Tardbp-005 ENSMUSG00000041459 10090 - 4:148616636-148618367 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000147391
Transcript ID Placenta
ENSMUST00000147391 27.694±3.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240185 TARDBP-001 protein_coding Homo_sapiens 0 942
ENST00000315091 TARDBP-003 protein_coding Homo_sapiens 0 219
ENST00000439080 TARDBP-011 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000448913 TARDBPP2-001 processed_pseudogene Homo_sapiens 3e-34 150
ENST00000473869 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 593
ENST00000477447 TARDBP-007 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000480464 TARDBP-009 processed_transcript Homo_sapiens 0 372
ENST00000496840 TARDBP-008 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000523386 RP11-16E18.1-001 unprocessed_pseudogene Homo_sapiens 0 298
ENST00000611008 TARDBP-026 processed_transcript Homo_sapiens 0 649
ENST00000611136 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000611963 TARDBP-020 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000613177 TARDBP-027 processed_transcript Homo_sapiens 0 399
ENST00000614494 TARDBP-023 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000614757 TARDBP-001 nonsense_mediated_decay Homo_sapiens 0 593
ENST00000617172 TARDBP-019 protein_coding Homo_sapiens 0 222
ENST00000617757 TARDBP-028 processed_transcript Homo_sapiens 6e-37 158
ENST00000619555 TARDBP-018 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000620505 TARDBP-024 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000620632 TARDBP-021 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000621573 TARDBP-025 nonsense_mediated_decay Homo_sapiens 0 1312
ENST00000621790 TARDBP-012 protein_coding Homo_sapiens 0 219
ENST00000622057 TARDBP-017 protein_coding Homo_sapiens 0 222
ENST00000622108 TARDBP-004 nonsense_mediated_decay Homo_sapiens 0 209

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