C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | TAR DNA binding protein | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000186947  |
Tardbp-015 |
ENSMUSG00000041459 |
10090 | - |
4:148618605-148626754  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008JY | CIL_0008JY_0002 | VISTA | 4:148408124-149009196 |
| CIL_0008JG | CIL_0008JG_0002 | VISTA | 4:148444314-149044861 |
| CIL_0008RU | CIL_0008RU_0002 | VISTA | 4:148508781-149109416 |
| CIL_0008S2 | CIL_0008S2_0002 | VISTA | 4:148555953-149160332 |
| CIL_00082Y | CIL_00082Y_0002 | VISTA | 4:148576108-149176659 |
| CIL_00085P | CIL_00085P_0002 | VISTA | 4:148597228-149198219 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000240185
|
TARDBP-001 | protein_coding | Homo_sapiens | 0 | 771 |
|
ENST00000315091
|
TARDBP-003 | protein_coding | Homo_sapiens | 0 | 756 |
|
ENST00000407792
|
RP11-793L10.1-001 | processed_pseudogene | Homo_sapiens | 0 | 285 |
|
ENST00000439080
|
TARDBP-011 | nonsense_mediated_decay | Homo_sapiens | 0 | 363 |
|
ENST00000442013
|
TARDBPP1-001 | processed_pseudogene | Homo_sapiens | 0 | 279 |
|
ENST00000448913
|
TARDBPP2-001 | processed_pseudogene | Homo_sapiens | 0 | 652 |
|
ENST00000472476
|
TARDBP-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 409 |
|
ENST00000473118
|
TARDBP-004 | protein_coding | Homo_sapiens | 0 | 756 |
|
ENST00000473869
|
TARDBP-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 756 |
|
ENST00000476201
|
TARDBP-005 | protein_coding | Homo_sapiens | 0 | 412 |
|
ENST00000477447
|
TARDBP-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 206 |
|
ENST00000523386
|
RP11-16E18.1-001 | unprocessed_pseudogene | Homo_sapiens | 1.00053e-42 | 178 |
|
ENST00000610369
|
TARDBP-022 | protein_coding | Homo_sapiens | 0 | 207 |
|
ENST00000611136
|
TARDBP-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 189 |
|
ENST00000611963
|
TARDBP-020 | nonsense_mediated_decay | Homo_sapiens | 0 | 189 |
|
ENST00000612542
|
TARDBP-003 | protein_coding | Homo_sapiens | 1.99965e-42 | 176 |
|
ENST00000613864
|
TARDBP-014 | processed_transcript | Homo_sapiens | 0 | 577 |
|
ENST00000614757
|
TARDBP-001 | nonsense_mediated_decay | Homo_sapiens | 0 | 771 |
|
ENST00000616545
|
TARDBP-013 | protein_coding | Homo_sapiens | 0 | 749 |
|
ENST00000617172
|
TARDBP-019 | protein_coding | Homo_sapiens | 0 | 375 |
|
ENST00000618606
|
TARDBP-015 | retained_intron | Homo_sapiens | 0 | 359 |
|
ENST00000619555
|
TARDBP-018 | nonsense_mediated_decay | Homo_sapiens | 0 | 206 |
|
ENST00000620632
|
TARDBP-021 | nonsense_mediated_decay | Homo_sapiens | 0 | 206 |
|
ENST00000621715
|
TARDBP-016 | protein_coding | Homo_sapiens | 0 | 1061 |
|
ENST00000621790
|
TARDBP-012 | protein_coding | Homo_sapiens | 0 | 749 |
|
ENST00000622057
|
TARDBP-017 | protein_coding | Homo_sapiens | 0 | 387 |
