C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190696 Tardbp-011 ENSMUSG00000041459 10090 - 4:148618035-148626770 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000190696
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000190696 21.873±4.39 9.164±1.53 36.465±6.74 9.054±0.31 10.149±0.56 15.885±0.83 68.936±7.94 22.667±3.73 16.692±0.00 32.733±23.99 58.559±20.39 27.975±11.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240185 TARDBP-001 protein_coding Homo_sapiens 0 1277
ENST00000315091 TARDBP-003 protein_coding Homo_sapiens 0 549
ENST00000439080 TARDBP-011 nonsense_mediated_decay Homo_sapiens 0 1633
ENST00000442013 TARDBPP1-001 processed_pseudogene Homo_sapiens 0 699
ENST00000448913 TARDBPP2-001 processed_pseudogene Homo_sapiens 0 944
ENST00000472476 TARDBP-006 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000473118 TARDBP-004 protein_coding Homo_sapiens 0 348
ENST00000473869 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000476201 TARDBP-005 protein_coding Homo_sapiens 0 364
ENST00000477447 TARDBP-007 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000523386 RP11-16E18.1-001 unprocessed_pseudogene Homo_sapiens 0 717
ENST00000610369 TARDBP-022 protein_coding Homo_sapiens 0 392
ENST00000611136 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000611963 TARDBP-020 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000612542 TARDBP-003 protein_coding Homo_sapiens 1.99965e-42 176
ENST00000613864 TARDBP-014 processed_transcript Homo_sapiens 0 363
ENST00000614757 TARDBP-001 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000616545 TARDBP-013 protein_coding Homo_sapiens 0 568
ENST00000617172 TARDBP-019 protein_coding Homo_sapiens 0 566
ENST00000619555 TARDBP-018 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000620505 TARDBP-024 nonsense_mediated_decay Homo_sapiens 0 440
ENST00000620632 TARDBP-021 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000621573 TARDBP-025 nonsense_mediated_decay Homo_sapiens 0 346
ENST00000621715 TARDBP-016 protein_coding Homo_sapiens 0 363
ENST00000621790 TARDBP-012 protein_coding Homo_sapiens 0 599
ENST00000622057 TARDBP-017 protein_coding Homo_sapiens 0 549

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