C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13886
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117876 Gm13886-001 ENSMUSG00000083856 10090 + 2:104820179-104821361 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117876
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117876 0.124±0.09 0.454±0.00 0.211±0.08 0.072±0.08 0.050±0.00 0.091±0.00 0.106±0.02 0.065±0.02 0.050±0.02 0.094±0.02 0.099±0.04 0.294±0.10 0.079±0.01 0.073±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SB CIL_0008SB_0002 VISTA 2:104593780-105194712

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240185 TARDBP-001 protein_coding Homo_sapiens 0 1317
ENST00000315091 TARDBP-003 protein_coding Homo_sapiens 0 872
ENST00000439080 TARDBP-011 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000442013 TARDBPP1-001 processed_pseudogene Homo_sapiens 0 544
ENST00000448913 TARDBPP2-001 processed_pseudogene Homo_sapiens 0 1181
ENST00000472476 TARDBP-006 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000473118 TARDBP-004 protein_coding Homo_sapiens 0 688
ENST00000473869 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 878
ENST00000476201 TARDBP-005 protein_coding Homo_sapiens 0 453
ENST00000523386 RP11-16E18.1-001 unprocessed_pseudogene Homo_sapiens 0 507
ENST00000613864 TARDBP-014 processed_transcript Homo_sapiens 0 446
ENST00000614757 TARDBP-001 nonsense_mediated_decay Homo_sapiens 0 878
ENST00000616545 TARDBP-013 protein_coding Homo_sapiens 0 880
ENST00000617172 TARDBP-019 protein_coding Homo_sapiens 0 588
ENST00000618606 TARDBP-015 retained_intron Homo_sapiens 0 303
ENST00000620505 TARDBP-024 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000621573 TARDBP-025 nonsense_mediated_decay Homo_sapiens 8e-34 148
ENST00000621715 TARDBP-016 protein_coding Homo_sapiens 0 608
ENST00000621790 TARDBP-012 protein_coding Homo_sapiens 0 911
ENST00000622057 TARDBP-017 protein_coding Homo_sapiens 0 584

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