C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532916 PAX6-030 ENSG00000007372 9606 - 11:31793173-31794126 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873
CIL_000914 CIL_000914_0001 VISTA 11:31574048-32177516
CIL_0007JA CIL_0007JA_0002 UCNEbase 11:31639896-31819124
CIL_0007PY CIL_0007PY_0001 VISTA 11:31667627-32268476
CIL_00096J CIL_00096J_0001 VISTA 11:31730852-32331950

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111088 Pax6-004 protein_coding Mus_musculus 0 520
ENSMUST00000167211 Pax6-201 protein_coding Mus_musculus 0 518
ENSMUST00000146803 Pax6-026 processed_transcript Mus_musculus 0 518
ENSMUST00000154643 Pax6-014 retained_intron Mus_musculus 0 518
ENSMUST00000111082 Pax6-012 protein_coding Mus_musculus 0 518
ENSMUST00000090391 Pax6-013 protein_coding Mus_musculus 0 518
ENSMUST00000111083 Pax6-009 protein_coding Mus_musculus 0 518
ENSMUST00000111085 Pax6-008 protein_coding Mus_musculus 0 518
ENSMUST00000090397 Pax6-011 protein_coding Mus_musculus 0 518
ENSMUST00000123063 Pax6-003 processed_transcript Mus_musculus 0 518
ENSMUST00000111087 Pax6-002 protein_coding Mus_musculus 0 518
ENSMUST00000111086 Pax6-001 protein_coding Mus_musculus 0 518
ENSMUST00000147946 Pax6-027 retained_intron Mus_musculus 0 357
ENSMUST00000135412 Pax6-020 processed_transcript Mus_musculus 2e-27 126

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