C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111088 Pax6-004 ENSMUSG00000027168 10090 + 2:105671860-105697242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonOvaryPlacentaENSMUST00000111088
Transcript ID Colon Ovary Placenta
ENSMUST00000111088 0.070±0.00 0.082±0.00 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364
CIL_0007XG CIL_0007XG_0002 VISTA 2:105389599-105991449
CIL_0008UP CIL_0008UP_0002 VISTA 2:105418757-106020536
CIL_0007UQ CIL_0007UQ_0002 VISTA 2:105478530-106080039
CIL_0008KI CIL_0008KI_0002 VISTA 2:105533387-106134697
CIL_00096G CIL_00096G_0002 VISTA 2:105613336-106214486
CIL_0000ZD CIL_0000ZD_0002 CGP 2:105668900-105904564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000132 IMP establishment of mitotic spindle orientation
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001709 IMP cell fate determination
GO:0001764 IMP neuron migration
GO:0001933 IMP negative regulation of protein phosphorylation
GO:0002052 IMP positive regulation of neuroblast proliferation
GO:0002088 IMP lens development in camera-type eye
GO:0003309 IMP type B pancreatic cell differentiation
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0007224 IDA smoothened signaling pathway
GO:0007409 IMP axonogenesis
GO:0007411 IMP axon guidance
GO:0007420 IMP brain development
GO:0007435 IMP salivary gland morphogenesis
GO:0008285 IMP negative regulation of cell proliferation
GO:0009786 IMP regulation of asymmetric cell division
GO:0009950 IMP dorsal/ventral axis specification
GO:0009952 IMP anterior/posterior pattern specification
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010468 IMP regulation of gene expression
GO:0021543 IMP pallium development
GO:0021778 IMP oligodendrocyte cell fate specification
GO:0021796 IMP cerebral cortex regionalization
GO:0021797 IMP forebrain anterior/posterior pattern specification
GO:0021798 IMP forebrain dorsal/ventral pattern formation
GO:0021902 IMP commitment of neuronal cell to specific neuron type in forebrain
GO:0021905 IMP forebrain-midbrain boundary formation
GO:0021912 IMP regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification
GO:0021913 IMP regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification
GO:0021918 IMP regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment
GO:0021978 IMP telencephalon regionalization
GO:0021983 IMP pituitary gland development
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0030154 IMP cell differentiation
GO:0030216 IMP keratinocyte differentiation
GO:0030334 IMP regulation of cell migration
GO:0030858 IMP positive regulation of epithelial cell differentiation
GO:0030900 IMP forebrain development
GO:0032808 IMP lacrimal gland development
GO:0033365 IMP protein localization to organelle
GO:0042462 IMP eye photoreceptor cell development
GO:0043010 IMP camera-type eye development
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045165 IGI cell fate commitment
GO:0045665 IGI negative regulation of neuron differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048505 IMP regulation of timing of cell differentiation
GO:0048596 IGI embryonic camera-type eye morphogenesis
GO:0048708 IMP astrocyte differentiation
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0050767 IMP regulation of neurogenesis
GO:0060041 IGI retina development in camera-type eye
GO:2000178 IMP negative regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066224 pax6a-201 protein_coding Danio_rerio 2e-30 139
ENSDART00000128877 pax6a-203 protein_coding Danio_rerio 2e-30 139
ENSDART00000124577 pax6a-202 protein_coding Danio_rerio 2e-30 139
ENSDART00000148420 pax6a-001 protein_coding Danio_rerio 2e-30 139
ENSDART00000066225 pax6a-002 protein_coding Danio_rerio 2e-30 139
ENST00000241001 PAX6-002 protein_coding Homo_sapiens 0 758
ENST00000379107 PAX6-011 protein_coding Homo_sapiens 0 869
ENST00000379109 PAX6-004 protein_coding Homo_sapiens 0 758
ENST00000379111 PAX6-005 protein_coding Homo_sapiens 0 758
ENST00000379115 PAX6-001 protein_coding Homo_sapiens 0 758
ENST00000379123 PAX6-003 protein_coding Homo_sapiens 0 758
ENST00000379129 PAX6-009 protein_coding Homo_sapiens 0 1107
ENST00000379132 PAX6-008 protein_coding Homo_sapiens 0 1107
ENST00000419022 PAX6-201 protein_coding Homo_sapiens 0 1107
ENST00000464174 PAX6-010 retained_intron Homo_sapiens 0 758
ENST00000470027 PAX6-006 retained_intron Homo_sapiens 0 758
ENST00000471303 PAX6-014 processed_transcript Homo_sapiens 0 270
ENST00000494377 PAX6-007 retained_intron Homo_sapiens 0 758
ENST00000524853 PAX6-021 protein_coding Homo_sapiens 2e-32 143
ENST00000530373 PAX6-028 processed_transcript Homo_sapiens 0 691
ENST00000531910 PAX6-027 processed_transcript Homo_sapiens 0 580
ENST00000532916 PAX6-030 retained_intron Homo_sapiens 0 520
ENST00000533333 PAX6-019 retained_intron Homo_sapiens 0 758
ENST00000606377 PAX6-202 protein_coding Homo_sapiens 0 1107

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