C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: keratin 87 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534226 KRT87P-002 ENSG00000135477 9606 - 12:52250466-52258553 transcribed_unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000534226
Transcript ID Brain Testis
ENST00000534226 0.074±0.00 0.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TB CIL_0006TB_0001 CGP 12:52168996-52252186
CIL_00033Q CIL_00033Q_0004 CGP 12:52232520-52309163
CIL_00033Q CIL_00033Q_0009 CGP 12:52249300-52309163

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023718 5430421N21Rik-001 protein_coding Mus_musculus 0 1519
ENSMUST00000061185 Krt81-201 protein_coding Mus_musculus 0 1491
ENSMUST00000081945 Krt83-201 protein_coding Mus_musculus 0 1439
ENSMUST00000088049 Krt86-201 protein_coding Mus_musculus 0 1423
ENSMUST00000159029 5430421N21Rik-002 retained_intron Mus_musculus 0 809
ENSMUST00000023713 Krt82-201 protein_coding Mus_musculus 0 436
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 298
ENSMUST00000023714 4732456N10Rik-001 protein_coding Mus_musculus 0 244
ENSMUST00000077196 Krt80-201 protein_coding Mus_musculus 2e-22 111
ENSDART00000064983 krt1-c5-201 protein_coding Danio_rerio 0.0000002 62
ENSDART00000139066 krt1-c5-001 protein_coding Danio_rerio 0.0000002 62

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