C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 86
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088049 Krt86-201 ENSMUSG00000067614 10090 + 15:101473478-101479983 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000088049
Transcript ID Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088049 0.006±0.00 0.020±0.00 0.016±0.00 0.066±0.01 0.047±0.01 0.457±0.00 0.088±0.03 0.015±0.01 0.061±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0017 CGP 15:101459061-101479983
CIL_00033Q CIL_00033Q_0016 CGP 15:101473478-101491512

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0045095 IEA keratin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0.0000000004 71
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0.00000006 64
ENST00000252242 KRT5-001 protein_coding Homo_sapiens 0 298
ENST00000252245 KRT75-001 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 0 1314
ENST00000257951 KRT84-001 protein_coding Homo_sapiens 0 497
ENST00000257974 KRT82-001 protein_coding Homo_sapiens 0 555
ENST00000293525 KRT86-201 protein_coding Homo_sapiens 0 1687
ENST00000293670 KRT83-001 protein_coding Homo_sapiens 0 1443
ENST00000327741 KRT81-001 protein_coding Homo_sapiens 0 1511
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 0 202
ENST00000423955 KRT86-001 protein_coding Homo_sapiens 0 1687
ENST00000478317 VIM-004 processed_transcript Homo_sapiens 0.00000003 64
ENST00000478746 VIM-005 processed_transcript Homo_sapiens 0.00000002 64
ENST00000485947 VIM-007 processed_transcript Homo_sapiens 0.00000003 64
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0.00000007 64
ENST00000529785 KRT87P-001 processed_transcript Homo_sapiens 0 1408
ENST00000534226 KRT87P-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 1423
ENST00000544265 KRT85-002 protein_coding Homo_sapiens 0 761
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0.00000006 64
ENST00000547613 KRT7-005 processed_transcript Homo_sapiens 1e-20 104
ENST00000547890 KRT5-010 retained_intron Homo_sapiens 3e-22 110
ENST00000548409 KRT5-008 protein_coding Homo_sapiens 0 246
ENST00000549264 KRT90P-001 unprocessed_pseudogene Homo_sapiens 3e-17 94
ENST00000549511 KRT5-009 retained_intron Homo_sapiens 0 246
ENST00000552629 KRT5-002 retained_intron Homo_sapiens 0 298
ENST00000553310 KRT86-002 protein_coding Homo_sapiens 0 494
ENST00000615839 KRT81-201 protein_coding Homo_sapiens 0 1511
ENST00000620027 KRT123P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 874
ENST00000621314 KRT123P-002 processed_transcript Homo_sapiens 0 418

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