C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 4732456N10 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023714 4732456N10Rik-001 ENSMUSG00000048699 10090 - 15:101552356-101562950 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungOvaryPlacentaENSMUST00000023714
Transcript ID Adipose Brain Breast Colon Heart Lung Ovary Placenta
ENSMUST00000023714 0.359±0.07 0.040±0.00 0.020±0.01 0.039±0.00 0.024±0.01 0.065±0.05 0.194±0.08 0.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000V CGP 15:101541229-101562950
CIL_00033Q CIL_00033Q_000U CGP 15:101552356-101573904

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0045095 IEA keratin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252242 KRT5-001 protein_coding Homo_sapiens 0 913
ENST00000252244 KRT1-001 protein_coding Homo_sapiens 0 372
ENST00000252245 KRT75-001 protein_coding Homo_sapiens 0 669
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0 822
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 0 806
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 0 348
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0 652
ENST00000293525 KRT86-201 protein_coding Homo_sapiens 0 333
ENST00000327741 KRT81-001 protein_coding Homo_sapiens 0 333
ENST00000330553 KRT79-001 protein_coding Homo_sapiens 0 536
ENST00000330722 KRT6A-001 protein_coding Homo_sapiens 0 817
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 0 678
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 0 363
ENST00000406052 KRT8P43-001 processed_pseudogene Homo_sapiens 0 399
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 0 473
ENST00000413425 KRT8P18-001 processed_pseudogene Homo_sapiens 0 392
ENST00000423953 KRT8P20-001 processed_pseudogene Homo_sapiens 0 303
ENST00000423955 KRT86-001 protein_coding Homo_sapiens 0 333
ENST00000430398 KRT8P21-001 processed_pseudogene Homo_sapiens 0 303
ENST00000441609 KRT8P44-001 processed_pseudogene Homo_sapiens 0 267
ENST00000453110 KRT8P17-001 processed_pseudogene Homo_sapiens 0 422
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 0 494
ENST00000468527 KRT8P12-002 processed_transcript Homo_sapiens 3e-18 97
ENST00000472924 KRT8P12-001 transcribed_processed_pseudogene Homo_sapiens 3.9937e-43 180
ENST00000473150 KRT8P25-001 processed_pseudogene Homo_sapiens 0 353
ENST00000483942 KRT8P35-001 processed_pseudogene Homo_sapiens 0 422
ENST00000489121 KRT8P36-001 processed_pseudogene Homo_sapiens 0 449
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 0 534
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 0 484
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 0 496
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 0 597
ENST00000529785 KRT87P-001 processed_transcript Homo_sapiens 0 244
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 0 501
ENST00000534154 KRT8P26-001 processed_pseudogene Homo_sapiens 0 217
ENST00000534226 KRT87P-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 244
ENST00000544265 KRT85-002 protein_coding Homo_sapiens 0 243
ENST00000546453 KRT79-002 retained_intron Homo_sapiens 0 366
ENST00000546542 KRT8-015 protein_coding Homo_sapiens 0.000000000003 77
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 0 442
ENST00000546826 KRT8-013 protein_coding Homo_sapiens 0 359
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0 652
ENST00000547031 KRT8-020 retained_intron Homo_sapiens 0 448
ENST00000547413 KRT8-016 protein_coding Homo_sapiens 0 209
ENST00000547890 KRT5-010 retained_intron Homo_sapiens 0 204
ENST00000548409 KRT5-008 protein_coding Homo_sapiens 0 584
ENST00000548765 KRT1-002 retained_intron Homo_sapiens 0 287
ENST00000548998 KRT8-014 protein_coding Homo_sapiens 0 274
ENST00000549176 KRT8-018 retained_intron Homo_sapiens 0 355
ENST00000549264 KRT90P-001 unprocessed_pseudogene Homo_sapiens 0 544
ENST00000549511 KRT5-009 retained_intron Homo_sapiens 0 553
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 0 442
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0 652
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0 652
ENST00000552629 KRT5-002 retained_intron Homo_sapiens 0 880
ENST00000562022 KRT8P50-001 processed_pseudogene Homo_sapiens 0 460
ENST00000577607 KRT8P34-001 processed_pseudogene Homo_sapiens 0 202
ENST00000604166 KRT8P49-001 processed_pseudogene Homo_sapiens 0 431
ENST00000604727 KRT8P47-001 processed_pseudogene Homo_sapiens 0 451
ENST00000615839 KRT81-201 protein_coding Homo_sapiens 0 333
ENST00000620027 KRT123P-001 transcribed_unprocessed_pseudogene Homo_sapiens 1.99993e-41 174
ENST00000622375 TTBK2-201 protein_coding Homo_sapiens 0 241

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