C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 5430421N21 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023718 5430421N21Rik-001 ENSMUSG00000067613 10090 - 15:101485131-101491512 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonMuscleOvaryTestisENSMUST00000023718
Transcript ID Adipose Bladder Brain Breast Colon Muscle Ovary Testis
ENSMUST00000023718 5.204±0.76 0.021±0.00 0.008±0.00 0.093±0.02 0.156±0.07 1.122±0.00 0.380±0.25 0.044±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0016 CGP 15:101473478-101491512
CIL_00033Q CIL_00033Q_0015 CGP 15:101485131-101532820

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0045095 IEA keratin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081223 krt5-201 protein_coding Danio_rerio 1e-29 135
ENSDART00000129044 krt5-001 protein_coding Danio_rerio 1e-29 135
ENSDART00000146185 krt5-003 protein_coding Danio_rerio 9e-26 122
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0.0000000003 71
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0.00000006 64
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 0 1351
ENST00000257951 KRT84-001 protein_coding Homo_sapiens 0 525
ENST00000257974 KRT82-001 protein_coding Homo_sapiens 0 510
ENST00000293525 KRT86-201 protein_coding Homo_sapiens 0 1452
ENST00000293670 KRT83-001 protein_coding Homo_sapiens 0 1607
ENST00000327741 KRT81-001 protein_coding Homo_sapiens 0 1568
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 9e-26 122
ENST00000423955 KRT86-001 protein_coding Homo_sapiens 0 1452
ENST00000478317 VIM-004 processed_transcript Homo_sapiens 0.00000003 64
ENST00000478746 VIM-005 processed_transcript Homo_sapiens 0.00000002 64
ENST00000485947 VIM-007 processed_transcript Homo_sapiens 0.00000003 64
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0.00000007 64
ENST00000529785 KRT87P-001 processed_transcript Homo_sapiens 0 1476
ENST00000534226 KRT87P-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 1519
ENST00000544265 KRT85-002 protein_coding Homo_sapiens 0 776
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0.00000006 64
ENST00000547613 KRT7-005 processed_transcript Homo_sapiens 5e-19 99
ENST00000553310 KRT86-002 protein_coding Homo_sapiens 0 457
ENST00000615839 KRT81-201 protein_coding Homo_sapiens 0 1568
ENST00000620027 KRT123P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 852
ENST00000621314 KRT123P-002 processed_transcript Homo_sapiens 0 407

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