C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553110 RPL36A-012 ENSG00000241343 9606 + X:101390983-101395795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000553110
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000553110 252.375±0.00 389.445±0.00 96.088±0.00 121.187±64.68 444.633±0.00 83.731±0.00 94.672±54.44 58.673±27.83 310.109±0.00 246.502±0.00 758.636±508.78 496.832±104.02 162.874±60.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DV CIL_0000DV_0001 CGP X:101349447-101396154

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002181 IC cytoplasmic translation
GO:0003735 IEA:IC structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 514
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 501
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 492
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 486
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 438
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 414
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 0 255
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 230

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