C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554584 SYNE2-002 ENSG00000054654 9606 + 14:63909098-64225564 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0001 CGP 14:63684214-64226433
CIL_00010O CIL_00010O_0001 CGP 14:63852983-64338112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0016235 IDA aggresome
GO:0031965 IDA nuclear membrane
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044217 Syne2-201 protein_coding Mus_musculus 0 2302
ENSMUST00000143031 Syne2-001 protein_coding Mus_musculus 0 2302
ENSMUST00000085280 Syne2-006 protein_coding Mus_musculus 0 1620
ENSMUST00000139204 Syne2-007 protein_coding Mus_musculus 0 1232
ENSMUST00000132161 Syne2-008 nonsense_mediated_decay Mus_musculus 0 1214
ENSMUST00000150317 Syne2-003 protein_coding Mus_musculus 0 1131
ENSMUST00000157033 Syne2-004 retained_intron Mus_musculus 0 1029
ENSMUST00000133623 Syne2-002 retained_intron Mus_musculus 0 821
ENSMUST00000126903 Syne2-013 nonsense_mediated_decay Mus_musculus 0 689
ENSMUST00000154509 Syne2-012 protein_coding Mus_musculus 0 503
ENSMUST00000131480 Syne2-014 protein_coding Mus_musculus 0 448
ENSMUST00000142864 Syne2-009 protein_coding Mus_musculus 0 377
ENSMUST00000124685 Syne2-005 retained_intron Mus_musculus 4e-29 137

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