C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin repeat containing, nuclear envelope 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000054654 SYNE2 9606 + 14:63852983-64226433 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341472 SYNE2-004 63852992-63960877 protein_coding
  ENST00000344113 SYNE2-001 63852983-64226433 protein_coding
  ENST00000357395 SYNE2-201 63852983-64226432 protein_coding
  ENST00000358025 SYNE2-202 63852983-64226432 protein_coding
  ENST00000394768 SYNE2-014 64075615-64226430 protein_coding
  ENST00000441438 SYNE2-007 64215432-64226430 protein_coding
  ENST00000458046 SYNE2-006 64214144-64226432 protein_coding
  ENST00000553289 SYNE2-013 64162114-64226432 nonsense_mediated_decay
  ENST00000553308 SYNE2-025 64098725-64113572 protein_coding
  ENST00000553455 SYNE2-026 64119430-64122522 protein_coding
  ENST00000553801 SYNE2-016 64196784-64209454 processed_transcript
  ENST00000553806 SYNE2-019 64209120-64212975 retained_intron
  ENST00000554584 SYNE2-002 63909098-64225564 protein_coding
  ENST00000554805 SYNE2-005 64209324-64226430 protein_coding
  ENST00000554928 SYNE2-021 64218232-64223380 retained_intron
  ENST00000554997 SYNE2-020 64209608-64212866 retained_intron
  ENST00000555002 SYNE2-011 64062782-64226432 protein_coding
  ENST00000555022 SYNE2-009 64204355-64226430 protein_coding
  ENST00000555241 SYNE2-018 64196754-64208945 processed_transcript
  ENST00000555323 SYNE2-024 64098445-64102043 processed_transcript
  ENST00000555612 SYNE2-008 64141438-64226430 nonsense_mediated_decay
  ENST00000556342 SYNE2-015 64166786-64168899 processed_transcript
  ENST00000556725 SYNE2-028 63864388-63874006 processed_transcript
  ENST00000556906 SYNE2-017 64202193-64209977 protein_coding
  ENST00000557005 SYNE2-003 64003024-64049279 retained_intron
  ENST00000557024 SYNE2-010 64158707-64162849 retained_intron
  ENST00000557060 SYNE2-012 64073988-64100360 retained_intron
  ENST00000557084 SYNE2-022 64214144-64219314 nonsense_mediated_decay
  ENST00000557307 SYNE2-023 64212811-64214524 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344113ENST00000358025ENST00000394768ENST00000458046ENST00000553289ENST00000554805ENST00000554928ENST00000555002ENST00000555022ENST00000555612ENST00000556725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344113 N/A N/A 8.053±0.00 N/A N/A 6.360±0.00 N/A 1.859±0.00 2.538±0.00 4.082±0.00 0.670±0.00 4.380±0.00 N/A N/A
ENST00000358025 4.438±0.00 0.773±0.00 N/A 0.261±0.13 4.223±3.68 1.637±0.44 3.043±0.43 1.916±0.00 2.175±0.00 1.913±0.89 1.257±0.00 2.528±0.95 2.232±1.61 2.279±1.20
ENST00000394768 N/A N/A N/A N/A N/A N/A N/A 1.540±0.00 N/A N/A N/A N/A N/A N/A
ENST00000458046 N/A N/A N/A N/A 7.306±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553289 N/A N/A N/A N/A N/A 3.284±0.00 N/A 11.269±0.00 1.774±0.00 5.439±0.00 13.034±0.00 4.729±0.00 N/A 4.070±0.00
ENST00000554805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.293±0.00 N/A N/A
ENST00000554928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.812±0.00 35.386±0.00 49.881±0.00
ENST00000555002 7.215±0.00 1.663±0.00 N/A N/A 1.059±0.00 2.833±0.00 2.905±0.00 5.892±0.00 0.732±0.00 3.170±0.00 7.649±0.00 3.360±1.55 1.124±0.25 4.330±1.67
ENST00000555022 N/A 5.083±0.00 N/A N/A 5.313±0.00 7.014±0.00 N/A 26.197±0.00 3.991±0.00 8.663±0.00 20.850±0.00 N/A N/A 8.226±0.00
ENST00000555612 N/A N/A N/A N/A 1.812±0.00 N/A N/A 5.633±0.00 1.365±0.00 3.078±0.00 11.417±0.00 5.490±1.39 3.045±1.95 2.874±0.00
ENST00000556725 0.069±0.00 0.210±0.00 0.592±0.00 0.101±0.00 0.896±0.80 0.021±0.00 0.022±0.00 0.440±0.00 0.117±0.00 0.082±0.00 N/A 0.511±0.21 N/A 0.253±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0001 CGP 14:63684214-64226433
CIL_00010O CIL_00010O_0001 CGP 14:63852983-64338112

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005925 IDA focal adhesion
GO:0006998 IEA nuclear envelope organization
GO:0007097 IMP nuclear migration
GO:0007163 IEA establishment or maintenance of cell polarity
GO:0010761 IEA fibroblast migration
GO:0016021 IEA integral component of membrane
GO:0016235 IDA aggresome
GO:0016529 IDA sarcoplasmic reticulum
GO:0030016 IEA myofibril
GO:0030018 IDA Z disc
GO:0030335 ISS positive regulation of cell migration
GO:0031022 ISS nuclear migration along microfilament
GO:0031258 IDA lamellipodium membrane
GO:0031527 IDA filopodium membrane
GO:0031965 IDA nuclear membrane
GO:0031981 IDA nuclear lumen
GO:0034504 IEA protein localization to nucleus
GO:0034993 IDA SUN-KASH complex
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051642 IMP centrosome localization
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030107 syne2a spectrin repeat containing, nuclear envelope 2a protein_coding Danio_rerio
ENSDARG00000053484 syne2b spectrin repeat containing, nuclear envelope 2b protein_coding Danio_rerio
ENSMUSG00000063450 Syne2 spectrin repeat containing, nuclear envelope 2 protein_coding Mus_musculus

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