C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554805 SYNE2-005 ENSG00000054654 9606 + 14:64209324-64226430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000554805
Transcript ID Ovary
ENST00000554805 22.293±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0001 CGP 14:63684214-64226433
CIL_00010O CIL_00010O_0001 CGP 14:63852983-64338112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139204 Syne2-007 protein_coding Mus_musculus 0 1866
ENSMUST00000143031 Syne2-001 protein_coding Mus_musculus 0 1862
ENSMUST00000044217 Syne2-201 protein_coding Mus_musculus 0 1844
ENSMUST00000132161 Syne2-008 nonsense_mediated_decay Mus_musculus 0 1101
ENSMUST00000085280 Syne2-006 protein_coding Mus_musculus 0 1101
ENSMUST00000126903 Syne2-013 nonsense_mediated_decay Mus_musculus 0 749

Loading