C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557228 NPM1P5-001 ENSG00000258925 9606 + 15:92285841-92286678 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungMuscleOvaryTestisENST00000557228
Transcript ID Adrenal Breast Colon Kidney Lung Muscle Ovary Testis
ENST00000557228 0.028±0.00 0.014±0.00 0.039±0.00 0.014±0.00 0.040±0.00 0.038±0.00 0.050±0.03 0.039±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 815
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 787
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 676
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 675
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 532
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 7e-34 148

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