C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560358 RP11-244F12.1-001 ENSG00000259394 9606 + 15:62953173-62954124 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000560358
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000560358 0.333±0.00 0.119±0.00 0.124±0.00 0.134±0.00 0.232±0.00 0.167±0.00 0.093±0.05 0.115±0.01 0.672±0.00 0.053±0.01 0.149±0.00 0.262±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000502 CIL_000502_0002 CGP 15:62390526-63071915
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079644 Ybx1-001 protein_coding Mus_musculus 0 1225
ENSMUST00000117567 Gm11560-001 processed_pseudogene Mus_musculus 0 1074
ENSMUST00000127737 Ybx1-004 protein_coding Mus_musculus 0 793
ENSMUST00000123576 E130201H02Rik-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000119046 Gm15808-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000145976 Ybx1-007 processed_transcript Mus_musculus 0 344
ENSMUST00000142884 Ybx1-005 processed_transcript Mus_musculus 0 305
ENSMUST00000139897 Ybx1-003 processed_transcript Mus_musculus 0 305
ENSMUST00000152733 Ybx1-002 processed_transcript Mus_musculus 0 255

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