C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564888 RP11-382N13.3-001 ENSG00000261007 9606 + 16:5365797-5366688 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleTestisENST00000564888
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Testis
ENST00000564888 0.049±0.00 0.013±0.00 0.078±0.00 0.083±0.00 1.262±0.00 0.012±0.00 0.174±0.00 0.012±0.00 0.046±0.00 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EQ CIL_0000EQ_0001 CGP 16:5084304-7713338

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 813
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 675
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 673
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 481
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 418
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 327

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