C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 8, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584337 CDH8-003 ENSG00000150394 9606 - 16:61725166-62036402 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartOvaryPlacentaENST00000584337
Transcript ID Brain Breast Colon Heart Ovary Placenta
ENST00000584337 1.763±0.00 0.035±0.00 0.057±0.01 0.018±0.01 0.280±0.31 1.231±0.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128860 Cdh8-001 protein_coding Mus_musculus 0 2392
ENSMUST00000093249 Cdh8-002 protein_coding Mus_musculus 0 2392
ENSMUST00000142129 Cdh8-005 protein_coding Mus_musculus 0 2392
ENSMUST00000155527 Cdh8-004 protein_coding Mus_musculus 0 2392
ENSMUST00000145601 Cdh8-006 nonsense_mediated_decay Mus_musculus 0 2100
ENSMUST00000126895 Cdh8-007 retained_intron Mus_musculus 0 1223
ENSMUST00000142475 Cdh8-003 protein_coding Mus_musculus 0 1199
ENSMUST00000075190 Cdh11-201 protein_coding Mus_musculus 0 320
ENSMUST00000096485 Gm21811-001 unprocessed_pseudogene Mus_musculus 0 209
ENSMUST00000155660 Gm6483-003 processed_transcript Mus_musculus 0 206
ENSMUST00000139264 2610005L07Rik-002 transcribed_unprocessed_pseudogene Mus_musculus 7.00649e-45 187
ENSMUST00000097690 Gm10557-201 pseudogene Mus_musculus 9.99967e-42 176
ENSMUST00000153748 6820431F20Rik-001 processed_transcript Mus_musculus 4.99997e-41 174
ENSMUST00000127799 Gm6483-001 protein_coding Mus_musculus 4.99997e-41 174
ENSMUST00000153710 Gm6483-002 protein_coding Mus_musculus 4.99997e-41 174
ENSMUST00000140111 2610005L07Rik-001 processed_transcript Mus_musculus 2e-39 169
ENSMUST00000150051 6820431F20Rik-003 transcribed_unprocessed_pseudogene Mus_musculus 2e-39 169
ENSMUST00000178451 Gm21092-201 protein_coding Mus_musculus 3e-38 165
ENSMUST00000178995 Gm21092-202 protein_coding Mus_musculus 1e-37 163
ENSMUST00000133001 Gm6483-004 processed_transcript Mus_musculus 2e-21 110
ENSDART00000131097 BX957322.2-201 protein_coding Danio_rerio 0.00002 57

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