C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588959 RP11-188I24.1-001 ENSG00000267652 9606 - 18:41789162-41789395 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000588959
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000588959 0.409±0.00 0.240±0.00 0.346±0.00 0.170±0.00 1.183±0.00 0.165±0.00 0.287±0.00 0.160±0.00 0.495±0.00 0.109±0.00 3.605±0.00 0.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VI CIL_0003VI_0001 CGP 18:37243047-42087830

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 283
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 283
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 257
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 6.02558e-44 180
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 2.00386e-43 178
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 9.99995e-41 169
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 3e-22 108

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