C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068408 Rps15-001 ENSMUSG00000063457 10090 + 10:80292453-80294114 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068408 571.990±122.70 593.339±12.19 1469.995±164.70 648.127±366.21 634.369±220.76 978.184±261.99 403.886±102.84 726.336±96.68 1100.259±750.08 669.021±61.28 429.057±44.86 929.059±310.86 955.375±517.64 318.677±147.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZD CIL_0005ZD_0003 CGP 10:80261486-80294114
CIL_0000ZF CIL_0000ZF_0002 CGP 10:80292453-80318263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000056 IEA ribosomal small subunit export from nucleus
GO:0001649 IEA osteoblast differentiation
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit
GO:0016020 IEA membrane
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0042274 IEA ribosomal small subunit biogenesis
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104364 rps15-001 protein_coding Danio_rerio 0 403
ENST00000233609 RPS15-006 protein_coding Homo_sapiens 0 569
ENST00000412567 RP11-389O22.5-001 processed_pseudogene Homo_sapiens 0 448
ENST00000422958 RP5-827C21.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000433675 AC007969.5-001 processed_pseudogene Homo_sapiens 0 527
ENST00000449885 RPS15P5-001 processed_pseudogene Homo_sapiens 0 490
ENST00000476363 RP11-25H11.1-001 processed_pseudogene Homo_sapiens 0 387
ENST00000493323 RP11-264F23.1-001 processed_pseudogene Homo_sapiens 0 440
ENST00000522454 CTC-340A15.1-001 processed_pseudogene Homo_sapiens 0 383
ENST00000585665 RPS15-010 protein_coding Homo_sapiens 0 547
ENST00000586096 RPS15-011 protein_coding Homo_sapiens 0 422
ENST00000586686 RPS15-009 protein_coding Homo_sapiens 0 453
ENST00000589656 RPS15-004 protein_coding Homo_sapiens 0 520
ENST00000591032 RPS15-008 protein_coding Homo_sapiens 0 453
ENST00000591804 RPS15-013 protein_coding Homo_sapiens 0 453
ENST00000592588 RPS15-001 protein_coding Homo_sapiens 0 586
ENST00000592623 RPS15-012 protein_coding Homo_sapiens 0 571
ENST00000592700 RPS15-003 retained_intron Homo_sapiens 0 453
ENST00000593052 RPS15-002 protein_coding Homo_sapiens 0 573

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