C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neighbor of BRCA1 gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590996 NBR1-003 ENSG00000188554 9606 + 17:43171214-43210521 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000590996
Transcript ID Bladder Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000590996 4.126±0.00 5.026±0.00 4.056±0.00 2.761±0.00 5.632±0.00 4.233±0.00 3.750±0.00 12.314±0.00 4.861±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040M CIL_00040M_0001 CGP 17:43044295-43211689
CIL_0000KX CIL_0000KX_0002 CGP 17:43170481-43220041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005764 IEA lysosome
GO:0005770 ISS late endosome
GO:0005776 ISS autophagic vacuole
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016236 IDA macroautophagy
GO:0030500 ISS regulation of bone mineralization
GO:0031410 IEA cytoplasmic vesicle
GO:0032872 ISS regulation of stress-activated MAPK cascade
GO:0043130 IDA ubiquitin binding
GO:0045668 ISS negative regulation of osteoblast differentiation
GO:0051019 ISS mitogen-activated protein kinase binding
GO:0051259 IDA protein oligomerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107212 Nbr1-015 protein_coding Mus_musculus 0 3439
ENSMUST00000107218 Nbr1-202 protein_coding Mus_musculus 0 2327
ENSMUST00000107208 Nbr1-005 protein_coding Mus_musculus 0 2327
ENSMUST00000123558 Nbr1-004 nonsense_mediated_decay Mus_musculus 0 2327
ENSMUST00000103098 Nbr1-002 protein_coding Mus_musculus 0 2327
ENSMUST00000103099 Nbr1-001 protein_coding Mus_musculus 0 2327
ENSMUST00000071537 Nbr1-201 protein_coding Mus_musculus 0 2283
ENSMUST00000107213 Nbr1-003 protein_coding Mus_musculus 0 1973
ENSMUST00000149019 Nbr1-006 protein_coding Mus_musculus 0 1498
ENSMUST00000174013 Nbr1-017 retained_intron Mus_musculus 0 475
ENSMUST00000141170 Nbr1-013 retained_intron Mus_musculus 0 460
ENSMUST00000127871 Nbr1-009 retained_intron Mus_musculus 0 455
ENSMUST00000148805 Nbr1-012 retained_intron Mus_musculus 0 372
ENSMUST00000172744 Nbr1-018 retained_intron Mus_musculus 0 361
ENSMUST00000146452 Nbr1-008 retained_intron Mus_musculus 0 289
ENSMUST00000147239 Nbr1-014 protein_coding Mus_musculus 0 222
ENSMUST00000127421 Nbr1-016 protein_coding Mus_musculus 0 220
ENSMUST00000144517 Nbr1-011 processed_transcript Mus_musculus 0 209
ENSMUST00000136185 Nbr1-007 nonsense_mediated_decay Mus_musculus 6e-40 171

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