C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000KX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077297-ENSDARG00000045075 CGP 7955 12:28784764-28808063
GeneTranscriptPositionBiotype
ENSDARG00000045075 (tmem106a)
transmembrane protein 106A 		ENSDART00000066270 (tmem106a-003) 28802638-28807588 protein_coding
ENSDART00000123739 (tmem106a-002) 28802381-28807627 protein_coding
ENSDART00000133023 (tmem106a-001) 28802243-28808063 protein_coding
ENSDART00000143389 (tmem106a-005) 28802326-28805452 processed_transcript
ENSDART00000145952 (tmem106a-004) 28802775-28803682 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0000KX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188554-ENSG00000184988 CGP 9606 17:43170481-43220041
GeneTranscriptPositionBiotype
ENSG00000188554 (NBR1)
neighbor of BRCA1 gene 1 		ENST00000341165 (NBR1-001) 43170481-43211689 protein_coding
ENST00000422280 (NBR1-201) 43170494-43211687 protein_coding
ENST00000542611 (NBR1-002) 43171202-43209993 protein_coding
ENST00000585505 (NBR1-005) 43189914-43196120 retained_intron
ENST00000586650 (NBR1-007) 43170494-43177960 protein_coding
ENST00000589872 (NBR1-004) 43171243-43209857 protein_coding
ENST00000590996 (NBR1-003) 43171214-43210521 protein_coding
ENST00000592304 (NBR1-006) 43171225-43176676 retained_intron
ENST00000617399 (NBR1-202) 43177936-43177998 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000KX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017119-ENSMUSG00000034947 CGP 10090 11:101552149-101591788
GeneTranscriptPositionBiotype
ENSMUSG00000017119 (Nbr1)
neighbor of Brca1 gene 1 		ENSMUST00000071537 (Nbr1-201) 101556172-101581012 protein_coding
ENSMUST00000103098 (Nbr1-002) 101552654-101581951 protein_coding
ENSMUST00000103099 (Nbr1-001) 101552149-101581951 protein_coding
ENSMUST00000107208 (Nbr1-005) 101552858-101581951 protein_coding
ENSMUST00000107212 (Nbr1-015) 101552882-101581951 protein_coding
ENSMUST00000107213 (Nbr1-003) 101552858-101581951 protein_coding
ENSMUST00000107218 (Nbr1-202) 101556058-101581012 protein_coding
ENSMUST00000123558 (Nbr1-004) 101552858-101581951 nonsense_mediated_decay
ENSMUST00000127421 (Nbr1-016) 101552901-101559545 protein_coding
ENSMUST00000127871 (Nbr1-009) 101566033-101568446 retained_intron
ENSMUST00000136185 (Nbr1-007) 101555866-101559562 nonsense_mediated_decay
ENSMUST00000141170 (Nbr1-013) 101577824-101580788 retained_intron
ENSMUST00000144517 (Nbr1-011) 101568687-101569412 processed_transcript
ENSMUST00000146452 (Nbr1-008) 101561786-101565781 retained_intron
ENSMUST00000147239 (Nbr1-014) 101552234-101559546 protein_coding
ENSMUST00000148805 (Nbr1-012) 101575107-101576631 retained_intron
ENSMUST00000149019 (Nbr1-006) 101567119-101581951 protein_coding
ENSMUST00000149170 (Nbr1-010) 101552867-101568540 processed_transcript
ENSMUST00000172744 (Nbr1-018) 101572227-101575216 retained_intron
ENSMUST00000174013 (Nbr1-017) 101568294-101569403 retained_intron
ENSMUSG00000034947 (Tmem106a)
transmembrane protein 106A 		ENSMUST00000039581 (Tmem106a-001) 101582242-101591788 protein_coding
ENSMUST00000100403 (Tmem106a-002) 101582242-101591788 protein_coding
ENSMUST00000107194 (Tmem106a-004) 101582257-101588940 protein_coding
ENSMUST00000128614 (Tmem106a-003) 101582300-101588895 protein_coding
ENSMUST00000128659 (Tmem106a-006) 101585997-101590766 processed_transcript
ENSMUST00000143045 (Tmem106a-005) 101582244-101589434 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KX_0001ENSDARG00000045075ENSDART00000066270ENSDART00000123739ENSDART00000133023ENSDART00000143389ENSDART00000145952CIL_0000KX_0002ENSG00000188554ENST00000341165ENST00000422280ENST00000542611ENST00000585505ENST00000586650ENST00000589872ENST00000590996ENST00000592304ENST00000617399CIL_0000KX_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KX_0001ENSDARG00000045075ENSDART00000066270ENSDART00000123739ENSDART00000133023ENSDART00000143389CIL_0000KX_0002ENSG00000188554ENST00000341165ENST00000422280ENST00000589872ENST00000590996CIL_0000KX_0003ENSMUSG00000017119ENSMUST00000071537ENSMUST00000103099ENSMUST00000107208ENSMUST00000107212ENSMUST00000107213ENSMUST00000107218ENSMUST00000123558ENSMUST00000148805ENSMUST00000149019ENSMUST00000149170ENSMUSG00000034947ENSMUST00000039581ENSMUST00000100403ENSMUST00000107194ENSMUST00000128614ENSMUST00000128659
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045075 ENSDART00000066270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.191±0.00 N/A N/A N/A
ENSDART00000123739 N/A N/A N/A 3.410±0.70 N/A N/A 12.253±4.81 N/A 4.764±0.00 N/A 4.214±0.00 N/A N/A N/A
ENSDART00000133023 N/A N/A N/A 2.780±0.63 N/A N/A 11.462±5.66 13.425±4.79 1.351±0.00 N/A 5.128±0.00 N/A N/A N/A
ENSDART00000143389 N/A N/A N/A 1.796±0.00 N/A N/A 8.907±0.00 N/A 3.607±0.00 N/A N/A N/A N/A N/A
ENSDART00000145952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188554 ENST00000341165 N/A 12.293±0.00 3.768±0.00 N/A 11.391±4.48 N/A N/A N/A 9.693±0.10 11.645±5.61 3.004±0.00 17.449±7.87 N/A N/A
ENST00000422280 N/A N/A 3.870±0.00 1.460±0.00 N/A N/A N/A 1.827±0.00 N/A 1.352±0.00 2.046±0.00 2.835±0.00 N/A 18.204±0.00
ENST00000542611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.167±0.00
ENST00000590996 N/A N/A 4.126±0.00 N/A 5.026±0.00 4.056±0.00 2.761±0.00 N/A 5.632±0.00 4.233±0.00 3.750±0.00 12.314±0.00 4.861±0.00 N/A
ENST00000592304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017119 ENSMUST00000071537 17.437±1.22 15.061±3.43 N/A N/A 16.442±0.65 13.582±4.27 9.032±3.52 24.467±3.84 17.398±4.39 12.111±2.70 N/A 20.614±4.58 N/A 33.632±0.00
ENSMUST00000103098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000103099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.264±0.00
ENSMUST00000107208 N/A N/A N/A 5.153±0.58 N/A N/A N/A N/A 5.628±1.60 N/A N/A 11.071±3.77 7.978±1.57 N/A
ENSMUST00000107212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.644±0.75 5.942±0.00 N/A
ENSMUST00000107213 8.027±0.91 N/A 18.357±0.70 17.369±2.75 4.079±0.60 5.971±1.12 6.133±1.61 12.226±1.25 9.396±2.65 8.500±2.11 5.820±0.35 11.857±5.76 20.795±4.47 18.223±2.64
ENSMUST00000107218 N/A N/A N/A 12.943±3.48 N/A N/A 6.773±1.41 N/A 5.298±1.10 N/A N/A 5.691±0.00 15.028±0.00 35.769±10.77
ENSMUST00000123558 N/A N/A 5.709±0.69 N/A N/A N/A N/A N/A N/A N/A 8.928±1.38 6.279±1.33 N/A N/A
ENSMUST00000127421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148805 N/A 20.643±3.65 N/A N/A 22.570±2.99 31.122±6.88 N/A N/A 24.512±2.40 19.151±0.46 N/A 31.909±5.03 N/A N/A
ENSMUST00000149019 N/A N/A 7.724±0.60 10.495±0.00 N/A N/A 4.069±0.00 6.006±0.00 6.551±1.04 N/A 5.197±0.72 12.926±1.79 11.885±3.63 N/A
ENSMUST00000149170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 798.506±0.00
ENSMUST00000172744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034947 ENSMUST00000039581 15.140±4.99 2.862±0.55 6.826±0.87 0.350±0.18 10.026±1.97 6.510±0.94 1.323±0.34 47.689±5.84 3.271±0.94 6.124±0.72 0.342±0.14 2.490±0.93 24.098±8.80 3.057±0.92
ENSMUST00000100403 N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A 0.707±0.00 N/A 0.227±0.06 1.586±0.55 5.901±0.00 N/A
ENSMUST00000107194 24.871±0.00 6.265±1.69 N/A 0.623±0.00 18.712±4.29 N/A 2.447±0.20 N/A 3.739±0.86 N/A N/A 6.015±1.67 N/A 5.179±0.00
ENSMUST00000128614 N/A N/A 3.982±0.45 0.376±0.00 21.411±0.00 N/A 1.461±0.00 34.233±6.11 2.509±0.94 N/A N/A 2.183±0.00 N/A N/A
ENSMUST00000128659 8.688±2.56 5.105±1.40 3.408±0.40 0.425±0.14 9.219±1.93 7.199±1.46 1.170±0.32 27.398±7.43 2.494±0.64 4.183±0.02 0.167±0.04 3.985±0.65 17.442±10.33 1.800±0.38
ENSMUST00000143045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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