C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000605472 RP11-451F14.1-001 ENSG00000270799 9606 + 2:174171891-174172725 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastENST00000605472
Transcript ID Adrenal Breast
ENST00000605472 0.162±0.00 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_0003II CIL_0003II_0002 CGP 2:173906459-174248698
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0004JE CIL_0004JE_0001 CGP 2:174072447-174338492

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079644 Ybx1-001 protein_coding Mus_musculus 0 387
ENSMUST00000117567 Gm11560-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000119046 Gm15808-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000123576 E130201H02Rik-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000127737 Ybx1-004 protein_coding Mus_musculus 5e-35 152
ENSMUST00000139897 Ybx1-003 processed_transcript Mus_musculus 1e-30 137

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