C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000609684 PCDHB16-001 ENSG00000272674 9606 + 5:141181399-141186399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverLungOvaryPlacentaTestisENST00000609684
Transcript ID Adrenal Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000609684 0.389±0.00 1.078±0.00 0.678±0.06 0.183±0.00 0.244±0.18 0.271±0.00 1.080±0.00 0.336±0.03 1.106±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0009 CGP 5:141177790-141186399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 1740
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 1002
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 979
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 953
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 924
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 859
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 789

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