C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052387 Pcdhb14-201 ENSMUSG00000044043 10090 + 18:37447657-37451094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052387 2.476±0.49 2.484±0.21 1.215±0.06 0.747±0.05 2.313±0.73 1.282±0.10 1.022±0.25 0.943±0.19 0.069±0.05 2.302±0.48 0.187±0.04 3.136±1.98 0.038±0.05 0.082±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000S CGP 18:37442517-37451094
CIL_00062S CIL_00062S_000J CGP 18:37447657-37476340

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 1107
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 941
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 1186
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 1062
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 1027
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 942
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 909
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 981
ENST00000239450 PCDHB12-001 protein_coding Homo_sapiens 0 946
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 948
ENST00000354757 PCDHB11-001 protein_coding Homo_sapiens 0 924
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 909
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1799
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 1075
ENST00000609684 PCDHB16-001 protein_coding Homo_sapiens 0 1002
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 941
ENST00000622978 PCDHB12-003 protein_coding Homo_sapiens 0 941
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 1057
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 1799
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 795
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 769
ENST00000624887 PCDHB11-002 protein_coding Homo_sapiens 0 924
ENST00000624896 PCDHB14-003 protein_coding Homo_sapiens 0 981
ENST00000624949 PCDHB12-002 protein_coding Homo_sapiens 0 941

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