C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615966 HIST1H2BB-001 ENSG00000276410 9606 - 6:26043277-26043657 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000615966
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000615966 0.348±0.00 1.737±0.00 8.868±0.00 14.728±0.00 0.647±0.45 4.051±0.00 4.640±0.00 1.638±0.00 0.281±0.00 3.818±0.00 0.502±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UD CIL_0000UD_0006 CGP 6:26033176-26043657

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 NAS:IEA nucleosome
GO:0003677 NAS:IEA DNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 NAS nucleosome assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 431
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 431
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 420
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 420
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 409
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 366
ENSDART00000115210 ano9a-001 protein_coding Danio_rerio 0 322
ENSDART00000114598 ano9a-001 protein_coding Danio_rerio 0 322
ENSDART00000129255 ano9a-201 protein_coding Danio_rerio 0 322
ENSDART00000156838 ano9a-001 protein_coding Danio_rerio 0 322
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 320
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 318
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 318
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 315
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 315
ENSDART00000157137 si:dkey-261m9.19-001 protein_coding Danio_rerio 0 315
ENSDART00000102959 si:dkey-261m9.19-201 protein_coding Danio_rerio 0 313
ENSDART00000130784 zgc:173587-202 protein_coding Danio_rerio 0 311
ENSDART00000156508 zgc:173587-001 protein_coding Danio_rerio 0 309
ENSDART00000057788 zgc:171759-202 protein_coding Danio_rerio 0 309
ENSDART00000126590 zgc:173587-201 protein_coding Danio_rerio 0 307
ENSDART00000152449 zgc:171759-001 protein_coding Danio_rerio 0 305
ENSDART00000103017 zgc:171759-203 protein_coding Danio_rerio 0 305
ENSDART00000152388 zgc:171759-001 protein_coding Danio_rerio 0 305
ENSDART00000109751 protein_coding Danio_rerio 0 298
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 298
ENSDART00000146977 zgc:171759-209 protein_coding Danio_rerio 0 294
ENSDART00000152761 zgc:171759-001 protein_coding Danio_rerio 0 294
ENSDART00000113626 zgc:171759-205 protein_coding Danio_rerio 0 292
ENSDART00000073457 zgc:194989-001 protein_coding Danio_rerio 0 289
ENSDART00000145542 si:dkey-261m9.6-201 protein_coding Danio_rerio 0 283
ENSDART00000154377 si:dkey-261m9.6-001 protein_coding Danio_rerio 0 283
ENSDART00000050237 zgc:171759-201 protein_coding Danio_rerio 0 281
ENSDART00000155850 zgc:171759-001 protein_coding Danio_rerio 0 279
ENSDART00000146289 zgc:171759-208 protein_coding Danio_rerio 0 278
ENSDART00000154655 zgc:171759-001 protein_coding Danio_rerio 0 278
ENSDART00000114327 wu:fe11b02-201 protein_coding Danio_rerio 0 259

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