C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555022 SYNE2-009 ENSG00000054654 9606 + 14:64204355-64226430 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungMuscleTestisENST00000555022
Transcript ID Adrenal Breast Colon Kidney Liver Lung Muscle Testis
ENST00000555022 5.083±0.00 5.313±0.00 7.014±0.00 26.197±0.00 3.991±0.00 8.663±0.00 20.850±0.00 8.226±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0001 CGP 14:63684214-64226433
CIL_00010O CIL_00010O_0001 CGP 14:63852983-64338112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA:ISS actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005925 IDA focal adhesion
GO:0007097 IMP nuclear migration
GO:0016021 IEA integral component of membrane
GO:0016235 IDA aggresome
GO:0016529 IDA sarcoplasmic reticulum
GO:0030018 IDA Z disc
GO:0030335 ISS positive regulation of cell migration
GO:0031022 ISS nuclear migration along microfilament
GO:0031258 IDA lamellipodium membrane
GO:0031527 IDA filopodium membrane
GO:0031965 IDA nuclear membrane
GO:0031981 IDA nuclear lumen
GO:0034993 IDA SUN-KASH complex
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051642 IMP centrosome localization
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139204 Syne2-007 protein_coding Mus_musculus 0 2132
ENSMUST00000143031 Syne2-001 protein_coding Mus_musculus 0 2128
ENSMUST00000044217 Syne2-201 protein_coding Mus_musculus 0 2109
ENSMUST00000132161 Syne2-008 nonsense_mediated_decay Mus_musculus 0 1367
ENSMUST00000085280 Syne2-006 protein_coding Mus_musculus 0 1367
ENSMUST00000126903 Syne2-013 nonsense_mediated_decay Mus_musculus 0 743
ENSMUST00000154509 Syne2-012 protein_coding Mus_musculus 0 276
ENSMUST00000131480 Syne2-014 protein_coding Mus_musculus 0 219

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