C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555612 SYNE2-008 ENSG00000054654 9606 + 14:64141438-64226430 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000555612
Transcript ID Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000555612 1.812±0.00 5.633±0.00 1.365±0.00 3.078±0.00 11.417±0.00 5.490±1.39 3.045±1.95 2.874±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0001 CGP 14:63684214-64226433
CIL_00010O CIL_00010O_0001 CGP 14:63852983-64338112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044217 Syne2-201 protein_coding Mus_musculus 0 2466
ENSMUST00000085280 Syne2-006 protein_coding Mus_musculus 0 2466
ENSMUST00000143031 Syne2-001 protein_coding Mus_musculus 0 2466
ENSMUST00000139204 Syne2-007 protein_coding Mus_musculus 0 1886
ENSMUST00000132161 Syne2-008 nonsense_mediated_decay Mus_musculus 0 1369
ENSMUST00000126903 Syne2-013 nonsense_mediated_decay Mus_musculus 0 743
ENSMUST00000131480 Syne2-014 protein_coding Mus_musculus 0 675
ENSMUST00000154509 Syne2-012 protein_coding Mus_musculus 0 278

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