C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426248 PKP4-003 ENSG00000144283 9606 + 2:158456964-158681052 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000426248
Transcript ID Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000426248 3.527±0.00 10.907±0.00 2.229±0.00 3.724±0.00 1.428±0.10 3.805±0.00 1.148±0.00 16.983±0.00 1.281±0.87 13.535±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016337 IEA single organismal cell-cell adhesion
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032467 IEA positive regulation of cytokinesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183359 Pkp4-003 nonsense_mediated_decay Mus_musculus 0 5286
ENSMUST00000112577 Pkp4-010 protein_coding Mus_musculus 0 4813
ENSMUST00000102754 Pkp4-001 protein_coding Mus_musculus 0 4165
ENSMUST00000168631 Pkp4-201 protein_coding Mus_musculus 0 3203
ENSMUST00000151452 Pkp4-013 processed_transcript Mus_musculus 0 2542
ENSMUST00000184332 Pkp4-005 nonsense_mediated_decay Mus_musculus 0 2241
ENSMUST00000037903 Pkp4-004 protein_coding Mus_musculus 0 2034
ENSMUST00000123908 Pkp4-002 protein_coding Mus_musculus 0 1171
ENSMUST00000124725 Pkp4-011 processed_transcript Mus_musculus 0 688
ENSMUST00000124127 Pkp4-012 processed_transcript Mus_musculus 0 612
ENSMUST00000183625 Pkp4-006 processed_transcript Mus_musculus 0 508
ENSMUST00000184705 Pkp4-007 nonsense_mediated_decay Mus_musculus 0 329
ENSMUST00000126749 Pkp4-009 processed_transcript Mus_musculus 0 211
ENSMUST00000122888 Pkp4-008 processed_transcript Mus_musculus 0 211

Loading