C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452162 PKP4-004 ENSG00000144283 9606 + 2:158457133-158663066 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonMuscleOvaryENST00000452162
Transcript ID Bladder Breast Colon Muscle Ovary
ENST00000452162 13.636±0.00 4.233±0.00 6.064±0.00 0.710±0.00 4.798±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184332 Pkp4-005 nonsense_mediated_decay Mus_musculus 0 3177
ENSMUST00000168631 Pkp4-201 protein_coding Mus_musculus 0 2894
ENSMUST00000102754 Pkp4-001 protein_coding Mus_musculus 0 2894
ENSMUST00000112577 Pkp4-010 protein_coding Mus_musculus 0 2274
ENSMUST00000183359 Pkp4-003 nonsense_mediated_decay Mus_musculus 0 2265
ENSMUST00000037903 Pkp4-004 protein_coding Mus_musculus 0 1803
ENSMUST00000123908 Pkp4-002 protein_coding Mus_musculus 0 1803
ENSMUST00000124725 Pkp4-011 processed_transcript Mus_musculus 0 817
ENSMUST00000151452 Pkp4-013 processed_transcript Mus_musculus 0 640
ENSMUST00000184705 Pkp4-007 nonsense_mediated_decay Mus_musculus 0 532
ENSMUST00000183625 Pkp4-006 processed_transcript Mus_musculus 0 311
ENSMUST00000126749 Pkp4-009 processed_transcript Mus_musculus 0 209
ENSMUST00000122888 Pkp4-008 processed_transcript Mus_musculus 0 209

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