C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110351 Srsf5-003 ENSMUSG00000021134 10090 + 12:80945532-80950503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverMusclePlacentaENSMUST00000110351
Transcript ID Adrenal Colon Liver Muscle Placenta
ENSMUST00000110351 52.850±9.00 35.099±5.41 34.037±9.28 15.087±0.00 22.124±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0002 CGP 12:80790532-80950507
CIL_0000U3 CIL_0000U3_0002 CGP 12:80945504-80968079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0009611 IDA response to wounding
GO:0050733 IPI RS domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394366 SRSF5-005 protein_coding Homo_sapiens 0 1766
ENST00000553369 SRSF5-018 protein_coding Homo_sapiens 0 619
ENST00000553521 SRSF5-003 protein_coding Homo_sapiens 0 1882
ENST00000553548 SRSF5-016 protein_coding Homo_sapiens 0 496
ENST00000553635 SRSF5-004 protein_coding Homo_sapiens 0 1766
ENST00000554021 SRSF5-010 protein_coding Homo_sapiens 0 538
ENST00000554465 SRSF5-001 retained_intron Homo_sapiens 0 1266
ENST00000554929 SRSF5-008 retained_intron Homo_sapiens 0 1075
ENST00000555349 SRSF5-011 protein_coding Homo_sapiens 0 540
ENST00000555547 SRSF5-007 nonsense_mediated_decay Homo_sapiens 0 918
ENST00000556184 SRSF5-006 retained_intron Homo_sapiens 0 896
ENST00000556330 SRSF5-014 retained_intron Homo_sapiens 0 398
ENST00000556436 SRSF5-017 retained_intron Homo_sapiens 5e-34 148
ENST00000556587 SRSF5-019 processed_transcript Homo_sapiens 0 1375
ENST00000556647 SRSF5-013 processed_transcript Homo_sapiens 0 774
ENST00000557154 SRSF5-002 protein_coding Homo_sapiens 0 1877
ENST00000557460 SRSF5-015 retained_intron Homo_sapiens 0 496

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