C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110352 Srsf5-001 ENSMUSG00000021134 10090 + 12:80945532-80950503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartMuscleOvaryPlacentaENSMUST00000110352
Transcript ID Heart Muscle Ovary Placenta
ENSMUST00000110352 35.304±0.00 26.454±0.00 53.562±0.00 37.200±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0002 CGP 12:80790532-80950507
CIL_0000U3 CIL_0000U3_0002 CGP 12:80945504-80968079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0009611 IDA response to wounding
GO:0016607 IDA nuclear speck
GO:0050733 IPI RS domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394366 SRSF5-005 protein_coding Homo_sapiens 0 1749
ENST00000553369 SRSF5-018 protein_coding Homo_sapiens 0 599
ENST00000553521 SRSF5-003 protein_coding Homo_sapiens 0 1847
ENST00000553548 SRSF5-016 protein_coding Homo_sapiens 0 475
ENST00000553635 SRSF5-004 protein_coding Homo_sapiens 0 1772
ENST00000554021 SRSF5-010 protein_coding Homo_sapiens 0 536
ENST00000554465 SRSF5-001 retained_intron Homo_sapiens 0 1253
ENST00000554929 SRSF5-008 retained_intron Homo_sapiens 0 1062
ENST00000555349 SRSF5-011 protein_coding Homo_sapiens 0 538
ENST00000555547 SRSF5-007 nonsense_mediated_decay Homo_sapiens 0 904
ENST00000556184 SRSF5-006 retained_intron Homo_sapiens 0 881
ENST00000556330 SRSF5-014 retained_intron Homo_sapiens 0 383
ENST00000556436 SRSF5-017 retained_intron Homo_sapiens 5e-34 148
ENST00000556587 SRSF5-019 processed_transcript Homo_sapiens 0 1387
ENST00000556647 SRSF5-013 processed_transcript Homo_sapiens 0 760
ENST00000557154 SRSF5-002 protein_coding Homo_sapiens 0 1842
ENST00000557460 SRSF5-015 retained_intron Homo_sapiens 0 475

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