C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153056 Srsf5-005 ENSMUSG00000021134 10090 + 12:80945532-80950503 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153056
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153056 51.148±9.72 43.369±4.96 154.921±39.49 53.788±35.31 45.016±4.61 48.903±3.14 20.009±5.91 35.974±4.30 74.143±39.51 81.915±7.81 17.403±3.51 69.220±19.46 34.658±18.15 26.142±3.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M1 CIL_0002M1_0002 CGP 12:80790532-80950507
CIL_0000U3 CIL_0000U3_0002 CGP 12:80945504-80968079

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394366 SRSF5-005 protein_coding Homo_sapiens 0 1218
ENST00000553369 SRSF5-018 protein_coding Homo_sapiens 0 599
ENST00000553521 SRSF5-003 protein_coding Homo_sapiens 0 1253
ENST00000553548 SRSF5-016 protein_coding Homo_sapiens 0 475
ENST00000553635 SRSF5-004 protein_coding Homo_sapiens 0 1216
ENST00000554021 SRSF5-010 protein_coding Homo_sapiens 0 536
ENST00000554465 SRSF5-001 retained_intron Homo_sapiens 0 2817
ENST00000554929 SRSF5-008 retained_intron Homo_sapiens 0 1062
ENST00000555349 SRSF5-011 protein_coding Homo_sapiens 0 619
ENST00000555547 SRSF5-007 nonsense_mediated_decay Homo_sapiens 0 2098
ENST00000556184 SRSF5-006 retained_intron Homo_sapiens 0 2856
ENST00000556330 SRSF5-014 retained_intron Homo_sapiens 0 468
ENST00000556436 SRSF5-017 retained_intron Homo_sapiens 5e-34 148
ENST00000556587 SRSF5-019 processed_transcript Homo_sapiens 0 1266
ENST00000556647 SRSF5-013 processed_transcript Homo_sapiens 0 782
ENST00000557154 SRSF5-002 protein_coding Homo_sapiens 0 1247
ENST00000557460 SRSF5-015 retained_intron Homo_sapiens 0 475

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