C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stromal antigen 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037286 Stag1 10090 + 9:100597798-100959375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041418 Stag1-004 100643613-100958544 protein_coding
  ENSMUST00000122824 Stag1-014 100848161-100855814 retained_intron
  ENSMUST00000123302 Stag1-008 100643768-100957406 nonsense_mediated_decay
  ENSMUST00000123315 Stag1-010 100643613-100712690 retained_intron
  ENSMUST00000124487 Stag1-009 100597798-100737996 protein_coding
  ENSMUST00000129269 Stag1-001 100643448-100958545 protein_coding
  ENSMUST00000133388 Stag1-011 100643770-100776795 protein_coding
  ENSMUST00000138405 Stag1-005 100643616-100867293 nonsense_mediated_decay
  ENSMUST00000143150 Stag1-013 100834474-100849183 retained_intron
  ENSMUST00000143816 Stag1-003 100643600-100739597 retained_intron
  ENSMUST00000143955 Stag1-015 100889608-100951680 protein_coding
  ENSMUST00000144005 Stag1-012 100643613-100712709 retained_intron
  ENSMUST00000146312 Stag1-002 100643448-100796791 protein_coding
  ENSMUST00000146934 Stag1-006 100845050-100956834 protein_coding
  ENSMUST00000149771 Stag1-016 100796704-100957416 processed_transcript
  ENSMUST00000155108 Stag1-007 100643636-100957399 nonsense_mediated_decay
  ENSMUST00000191345 Stag1-017 100955769-100959375 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041418ENSMUST00000129269ENSMUST00000133388ENSMUST00000143955ENSMUST00000144005ENSMUST00000146312ENSMUST00000146934ENSMUST00000149771ENSMUST00000191345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041418 0.900±0.13 N/A N/A N/A 0.528±0.10 0.726±0.14 0.622±0.15 0.725±0.33 1.199±0.41 1.250±0.27 0.593±0.00 1.733±0.71 4.248±1.99 N/A
ENSMUST00000129269 2.587±0.40 0.348±0.16 5.631±0.54 7.305±3.21 1.610±0.66 0.473±0.10 1.392±0.49 1.682±0.53 3.303±1.81 1.787±0.41 3.135±0.35 2.352±2.32 7.372±2.15 2.189±0.19
ENSMUST00000133388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.218±0.00
ENSMUST00000143955 N/A N/A N/A N/A N/A N/A N/A N/A 1.514±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144005 N/A 2.820±0.00 N/A N/A N/A 2.755±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146312 N/A 1.315±0.56 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146934 N/A 1.838±0.00 1.895±0.00 10.858±0.00 0.627±0.00 0.992±0.26 0.641±0.05 0.569±0.00 1.470±0.79 0.919±0.00 0.845±0.00 6.294±9.47 15.255±14.13 4.094±3.89
ENSMUST00000149771 N/A 1.342±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.550±0.30 5.005±0.00 N/A
ENSMUST00000191345 N/A 0.931±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.004±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001C8 CIL_0001C8_0002 CGP 9:100552188-100959375
CIL_0000WP CIL_0000WP_0002 CGP 9:100597798-101034898

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061205 stag1a stromal antigen 1a protein_coding Danio_rerio
ENSDARG00000062137 stag1b stromal antigen 1b protein_coding Danio_rerio
ENSG00000118007 STAG1 stromal antigen 1 protein_coding Homo_sapiens

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