C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen (RNA binding protein) homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149454 Stau1-008 ENSMUSG00000039536 10090 - 2:166949246-166951231 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastOvaryENSMUST00000149454
Transcript ID Adipose Breast Ovary
ENSMUST00000149454 7.299±0.42 7.161±0.00 8.926±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0002 CGP 2:166906040-166996299
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340954 STAU1-004 protein_coding Homo_sapiens 0 883
ENST00000347458 STAU1-003 protein_coding Homo_sapiens 0 883
ENST00000360426 STAU1-002 protein_coding Homo_sapiens 0 883
ENST00000371792 STAU1-007 protein_coding Homo_sapiens 0 883
ENST00000371802 STAU1-006 protein_coding Homo_sapiens 0 883
ENST00000371828 STAU1-201 protein_coding Homo_sapiens 0 883
ENST00000371856 STAU1-001 protein_coding Homo_sapiens 0 883
ENST00000600023 CTB-187L3.1-001 unprocessed_pseudogene Homo_sapiens 0 355
ENST00000614381 STAU1-202 protein_coding Homo_sapiens 0 883

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