C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen (RNA binding protein) homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049412 Stau1-005 ENSMUSG00000039536 10090 - 2:166948147-166996103 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaENSMUST00000049412
Transcript ID Muscle Ovary Placenta
ENSMUST00000049412 2.250±0.06 8.692±0.13 9.364±4.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0002 CGP 2:166906040-166996299
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0008298 IDA intracellular mRNA localization
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340954 STAU1-004 protein_coding Homo_sapiens 0 1692
ENST00000347458 STAU1-003 protein_coding Homo_sapiens 0 1753
ENST00000360426 STAU1-002 protein_coding Homo_sapiens 0 1692
ENST00000371792 STAU1-007 protein_coding Homo_sapiens 0 1731
ENST00000371802 STAU1-006 protein_coding Homo_sapiens 0 1676
ENST00000371828 STAU1-201 protein_coding Homo_sapiens 0 1615
ENST00000371856 STAU1-001 protein_coding Homo_sapiens 0 1694
ENST00000600023 CTB-187L3.1-001 unprocessed_pseudogene Homo_sapiens 0 342
ENST00000614381 STAU1-202 protein_coding Homo_sapiens 0 1637

Loading