C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen (RNA binding protein) homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109236 Stau1-002 ENSMUSG00000039536 10090 - 2:166948273-166996299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109236
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109236 4.799±0.85 19.108±7.49 4.082±0.72 8.468±5.04 5.770±1.29 6.158±2.19 2.767±1.04 5.823±0.65 4.722±1.95 4.323±1.18 2.983±0.77 7.789±3.23 17.594±12.24 4.873±1.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0002 CGP 2:166906040-166996299
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0008298 IDA intracellular mRNA localization
GO:0010494 IDA cytoplasmic stress granule
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340954 STAU1-004 protein_coding Homo_sapiens 0 1849
ENST00000347458 STAU1-003 protein_coding Homo_sapiens 0 2002
ENST00000360426 STAU1-002 protein_coding Homo_sapiens 0 1849
ENST00000371792 STAU1-007 protein_coding Homo_sapiens 0 2019
ENST00000371802 STAU1-006 protein_coding Homo_sapiens 0 1925
ENST00000371828 STAU1-201 protein_coding Homo_sapiens 0 1772
ENST00000371856 STAU1-001 protein_coding Homo_sapiens 0 1851
ENST00000600023 CTB-187L3.1-001 unprocessed_pseudogene Homo_sapiens 0 355
ENST00000614381 STAU1-202 protein_coding Homo_sapiens 0 1796

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