C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen (RNA binding protein) homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109235 Stau1-001 ENSMUSG00000039536 10090 - 2:166947549-166996278 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109235
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109235 1.891±0.32 4.090±0.16 7.834±0.59 1.943±0.31 2.006±0.19 1.928±0.10 2.309±0.60 2.286±0.49 1.910±0.04 2.692±0.78 4.368±1.88 5.062±1.25 1.221±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0002 CGP 2:166906040-166996299
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0008298 IDA intracellular mRNA localization
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340954 STAU1-004 protein_coding Homo_sapiens 0 1871
ENST00000347458 STAU1-003 protein_coding Homo_sapiens 0 2025
ENST00000360426 STAU1-002 protein_coding Homo_sapiens 0 1871
ENST00000371792 STAU1-007 protein_coding Homo_sapiens 0 2002
ENST00000371802 STAU1-006 protein_coding Homo_sapiens 0 1947
ENST00000371828 STAU1-201 protein_coding Homo_sapiens 0 1794
ENST00000371856 STAU1-001 protein_coding Homo_sapiens 0 1873
ENST00000600023 CTB-187L3.1-001 unprocessed_pseudogene Homo_sapiens 0 355
ENST00000614381 STAU1-202 protein_coding Homo_sapiens 0 1818

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