C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen (RNA binding protein) homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109238 Stau1-003 ENSMUSG00000039536 10090 - 2:166948147-166996265 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109238 4.982±0.23 8.966±0.00 8.643±0.16 9.306±0.72 2.646±0.00 3.369±0.17 2.429±0.45 3.143±0.77 4.423±1.33 3.590±0.82 4.636±0.40 6.457±3.33 14.449±5.52 2.544±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0002 CGP 2:166906040-166996299
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008157 IEA protein phosphatase 1 binding
GO:0008298 IDA intracellular mRNA localization
GO:0016020 IEA membrane
GO:0030425 IEA dendrite
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0044297 IEA cell body
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340954 STAU1-004 protein_coding Homo_sapiens 0 1794
ENST00000347458 STAU1-003 protein_coding Homo_sapiens 0 1932
ENST00000360426 STAU1-002 protein_coding Homo_sapiens 0 1794
ENST00000371792 STAU1-007 protein_coding Homo_sapiens 0 1910
ENST00000371802 STAU1-006 protein_coding Homo_sapiens 0 2032
ENST00000371828 STAU1-201 protein_coding Homo_sapiens 0 1893
ENST00000371856 STAU1-001 protein_coding Homo_sapiens 0 1796
ENST00000600023 CTB-187L3.1-001 unprocessed_pseudogene Homo_sapiens 0 355
ENST00000614381 STAU1-202 protein_coding Homo_sapiens 0 1740

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