C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139252 Chn1-004 ENSMUSG00000056486 10090 - 2:73624878-73775326 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonOvaryPlacentaENSMUST00000139252
Transcript ID Colon Ovary Placenta
ENSMUST00000139252 1.243±0.28 1.103±0.42 3.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0002 CGP 2:73563215-73775346
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295497 CHN1-002 protein_coding Homo_sapiens 0 497
ENST00000409089 CHN1-012 protein_coding Homo_sapiens 0 265
ENST00000409156 CHN1-003 protein_coding Homo_sapiens 0 368
ENST00000409597 CHN1-014 protein_coding Homo_sapiens 0 366
ENST00000409900 CHN1-001 protein_coding Homo_sapiens 0 496
ENST00000413882 CHN1-013 protein_coding Homo_sapiens 0 366
ENST00000425395 CHN1-008 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000443238 CHN1-010 protein_coding Homo_sapiens 0 494
ENST00000444394 CHN1-011 protein_coding Homo_sapiens 0 496
ENST00000444573 CHN1-015 protein_coding Homo_sapiens 0 267
ENST00000451799 CHN1-005 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000469597 CHN1-006 processed_transcript Homo_sapiens 2e-18 97
ENST00000481174 CHN1-018 processed_transcript Homo_sapiens 5e-28 128
ENST00000485882 CHN1-016 retained_intron Homo_sapiens 0 497
ENST00000488080 CHN1-004 processed_transcript Homo_sapiens 0 830
ENST00000490654 CHN1-007 retained_intron Homo_sapiens 0.00000000003 73
ENST00000491801 CHN1-017 retained_intron Homo_sapiens 0.0000000001 71
ENST00000514910 RP11-451F20.1-001 processed_pseudogene Homo_sapiens 0 270

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