C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180045 Chn1-202 ENSMUSG00000056486 10090 - 2:73610660-73775346 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000180045
Transcript ID Adipose Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000180045 1.303±0.00 1.819±0.00 32.377±4.79 1.849±0.60 0.098±0.05 0.215±0.08 0.828±0.27 0.310±0.05 6.791±5.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0002 CGP 2:73563215-73775346
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295497 CHN1-002 protein_coding Homo_sapiens 0 1539
ENST00000409089 CHN1-012 protein_coding Homo_sapiens 0 658
ENST00000409156 CHN1-003 protein_coding Homo_sapiens 0 1129
ENST00000409597 CHN1-014 protein_coding Homo_sapiens 0 1410
ENST00000409900 CHN1-001 protein_coding Homo_sapiens 0 2433
ENST00000413882 CHN1-013 protein_coding Homo_sapiens 0 678
ENST00000425395 CHN1-008 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000443238 CHN1-010 protein_coding Homo_sapiens 0 789
ENST00000444394 CHN1-011 protein_coding Homo_sapiens 0 905
ENST00000444573 CHN1-015 protein_coding Homo_sapiens 0 265
ENST00000451799 CHN1-005 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000469597 CHN1-006 processed_transcript Homo_sapiens 0 374
ENST00000481174 CHN1-018 processed_transcript Homo_sapiens 5e-28 128
ENST00000485882 CHN1-016 retained_intron Homo_sapiens 0 501
ENST00000488080 CHN1-004 processed_transcript Homo_sapiens 0 1539
ENST00000490654 CHN1-007 retained_intron Homo_sapiens 0 693
ENST00000491801 CHN1-017 retained_intron Homo_sapiens 0 189
ENST00000492964 CHN1-009 retained_intron Homo_sapiens 0 551
ENST00000514910 RP11-451F20.1-001 processed_pseudogene Homo_sapiens 0 1059

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