C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102677 Chn1-002 ENSMUSG00000056486 10090 - 2:73610745-73660406 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverMuscleOvaryENSMUST00000102677
Transcript ID Brain Colon Liver Muscle Ovary
ENSMUST00000102677 38.625±0.00 3.016±1.21 0.028±0.00 0.080±0.00 0.993±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0002 CGP 2:73563215-73775346
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0008045 IMP motor neuron axon guidance
GO:0032314 IDA regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0046875 IPI ephrin receptor binding
GO:0048013 IMP ephrin receptor signaling pathway
GO:0050770 IDA regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295497 CHN1-002 protein_coding Homo_sapiens 0 1877
ENST00000409089 CHN1-012 protein_coding Homo_sapiens 0 658
ENST00000409156 CHN1-003 protein_coding Homo_sapiens 0 1129
ENST00000409597 CHN1-014 protein_coding Homo_sapiens 0 1410
ENST00000409900 CHN1-001 protein_coding Homo_sapiens 0 1609
ENST00000413882 CHN1-013 protein_coding Homo_sapiens 0 678
ENST00000425395 CHN1-008 nonsense_mediated_decay Homo_sapiens 0 586
ENST00000443238 CHN1-010 protein_coding Homo_sapiens 0 787
ENST00000444394 CHN1-011 protein_coding Homo_sapiens 0 907
ENST00000444573 CHN1-015 protein_coding Homo_sapiens 0 499
ENST00000481174 CHN1-018 processed_transcript Homo_sapiens 5e-28 128
ENST00000485882 CHN1-016 retained_intron Homo_sapiens 0 514
ENST00000488080 CHN1-004 processed_transcript Homo_sapiens 0 1541
ENST00000490654 CHN1-007 retained_intron Homo_sapiens 0.00000000003 73
ENST00000491801 CHN1-017 retained_intron Homo_sapiens 0 189
ENST00000492964 CHN1-009 retained_intron Homo_sapiens 0 551
ENST00000514910 RP11-451F20.1-001 processed_pseudogene Homo_sapiens 0 547

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