C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L13A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074129 Rpl13a 10090 - 7:45125558-45136231 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102669 Rpl13a-009 45125922-45128720 nonsense_mediated_decay
  ENSMUST00000124300 Rpl13a-011 45125922-45136231 protein_coding
  ENSMUST00000125074 Rpl13a-006 45126003-45128735 processed_transcript
  ENSMUST00000125936 Rpl13a-008 45125923-45126879 retained_intron
  ENSMUST00000131697 Rpl13a-005 45126765-45128735 retained_intron
  ENSMUST00000135681 Rpl13a-004 45126478-45126987 processed_transcript
  ENSMUST00000138887 Rpl13a-007 45126478-45127823 retained_intron
  ENSMUST00000141807 Rpl13a-002 45126478-45128736 processed_transcript
  ENSMUST00000142239 Rpl13a-010 45125560-45128735 processed_transcript
  ENSMUST00000150350 Rpl13a-001 45125558-45128748 protein_coding
  ENSMUST00000152970 Rpl13a-003 45125922-45128649 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102669ENSMUST00000125074ENSMUST00000125936ENSMUST00000131697ENSMUST00000138887ENSMUST00000141807ENSMUST00000142239ENSMUST00000150350
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102669 252.308±70.72 142.105±0.00 316.784±36.08 99.046±17.16 332.707±168.37 131.670±34.80 69.906±15.99 98.824±23.13 202.331±169.85 259.296±78.17 107.273±19.29 209.719±77.93 155.682±37.63 59.825±5.15
ENSMUST00000125074 213.381±43.72 269.318±92.06 221.950±0.11 155.680±17.61 377.055±54.21 156.617±43.89 86.954±17.73 144.403±33.79 142.841±85.90 211.704±51.81 126.018±20.59 196.174±41.66 163.826±21.80 69.555±3.02
ENSMUST00000125936 N/A N/A N/A 674.668±0.00 N/A N/A N/A N/A 570.605±0.00 N/A 123.566±16.95 1706.800±723.52 824.897±745.48 481.463±0.00
ENSMUST00000131697 224.675±16.64 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 209.875±57.83 N/A N/A
ENSMUST00000138887 N/A 94.300±3.91 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141807 620.818±229.98 N/A 1245.876±435.31 945.483±13.12 458.362±54.67 299.407±69.06 295.969±37.42 313.857±75.08 675.685±615.29 N/A N/A 564.796±312.21 874.110±482.23 267.055±48.71
ENSMUST00000142239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 247.678±0.00 N/A N/A
ENSMUST00000150350 88.120±6.82 N/A 130.983±16.84 156.597±8.15 N/A 128.603±38.85 N/A 61.974±11.11 192.921±174.32 N/A 36.401±8.80 141.570±105.60 221.983±99.89 23.847±1.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005125 IEA cytokine activity
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0016020 IEA membrane
GO:0017148 IDA negative regulation of translation
GO:0030529 ISO ribonucleoprotein complex
GO:0032496 IMP response to lipopolysaccharide
GO:0032844 IMP regulation of homeostatic process
GO:0048246 IMP macrophage chemotaxis
GO:0060425 IMP lung morphogenesis
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044093 rpl13a ribosomal protein L13a protein_coding Danio_rerio
ENSG00000142541 RPL13A ribosomal protein L13a protein_coding Homo_sapiens

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